2024-03-29 17:01:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035680956 4590 bp mRNA linear VRT 27-JUL-2020 DEFINITION PREDICTED: Morone saxatilis argonaute RISC component 4 (ago4), transcript variant X6, mRNA. ACCESSION XM_035680956 VERSION XM_035680956.1 DBLINK BioProject: PRJNA647910 KEYWORDS RefSeq. SOURCE Morone saxatilis (striped sea-bass) ORGANISM Morone saxatilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023340268.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Morone saxatilis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4590 /organism="Morone saxatilis" /mol_type="mRNA" /isolate="NCDOM2014" /db_xref="taxon:34816" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="whole blood" /dev_stage="immature" /country="USA: Aurora, NC" /collection_date="2014" /collected_by="Valerie N. Williams, Justin Schilling" gene 1..4590 /gene="ago4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:118342417" CDS 182..2773 /gene="ago4" /codon_start=1 /product="protein argonaute-4 isoform X6" /protein_id="XP_035536849.1" /db_xref="GeneID:118342417" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 263..652 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 683..835 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 836..1198 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(992..994,1037..1039,1079..1081,1091..1093, 1145..1147,1166..1168,1172..1174) /gene="ago4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1337..2644 /gene="ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1748..1750,1760..1762,1796..1807,1814..1816, 1838..1840,1847..1849,1859..1861,1871..1873) /gene="ago4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1952..1954,1958..1960,2198..2200,2612..2614) /gene="ago4" /note="active site" /db_xref="CDD:240015" ORIGIN
cccagaaccagcagcagcagcggtagttcaggtcagtcggtccagtcagcagtcatccacgcatctatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagcctcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcccgcaccaacctctctgtttcagcctccacggcgtcccggccttggcacggtgggaaaacccatccggctccttgccaaccacttccaggtgcagattcccaagattgatgtctatcactatgatatcgacatcaagcctgagaaacggcctcggagggtcaacagggaggttgtggacaccatggtgcggcacttcaagatgcaaatctttggagaccgacagcctggctacgacgggaagagaaacatgtacacagcacatccactgccgattgggagagacagggtggatctggaggtgactctgcctggcgaggggaaagatcagacgtttaaggtgtctttgcagtgggtgtctgtggtcagtcttcagatgctgctggaagccctgtcgggtcaccttaacgaggtccctgaagactccgttcaggctctggatgtcatcacgcggcacctgccttccatgaggtatactcctgtggggaggtcgtttttctcccctccggagggctattaccatcctctgggcggaggcagggaggtgtggtttggtttccatcaatctgtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcaacggctttctaccgcgctcagcctgtgatagagttcatgtgcgaggtgctagatatacagaacatcaacgaacagaccaaaccactgactgactcgcagcgcgtcaaattcaccaaggaaataagaggcttaaaagttgaggtcacacactgtggtcaaatgaagaggaagtaccgtgtgtgcaatgtaacgcgccggcctgcaagccaccaaacgttccccttacagcttgagaacggccaagccatggagtgcacagtagctcagtatttcaagcagaagtacaatctgcagctcaagtatccacatttaccctgcctgcaagtagggcaagaacagaagcacacctaccttcccctggaggtgtgtaatatagtagcaggccagcgctgtatcaagaaactgacagacaaccagacatccaccatgatcaaagctacagcgcgctcagcccccgacagacaggaggagatcagtagactggtcaaaagtaacagcatggtcgggggcccggacccttacctgaaggaatttggcattgttgtgcacaatgacatgacagaggtgacagggcgtgttctcccagcgcccatgctacagtatgggggccggaataagacagtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctatgctggaatcgagatcaaggtctgggctgtggcctgcttcgctccacagaaacagtgtcgagaggacctgctgaagagtttcaccgaccagcttcgaaagatctccaaggacgctgggatgcccattcaaggccagccttgtttctgtaaatacgcccaaggagctgacagtgtggagcccatgttcaaacacctcaagatgtcttatgtaggcctgcagctgattgtggtcatcctgcctggcaaaacaccagtctatgctgaggtaaagcgggtgggggacacactccttggcatggcaacccagtgcgtgcaggtgaagaacgtagtgaagacgtcccctcagaccctctccaacctgtgcctcaagatcaatgccaagctgggaggcatcaacaacgtcctcgtacctcatcagaggccctctgtgttccagcagcccgtcatcttcctgggtgcagatgtcacacatcctccagcaggtgatgggaagaagccgtccatcgcggccgtggtgggcagcatggatggccaccccagccgttactgcgccacggtgcgagtgcagacgtctagacaagacatgtcccaggagcagctctttagtcaggaggtaatccaagacctgaccaacatggtgcgggagctgctcatccagttctacaagtccacgcgcttcaagcccacacgaatcatctattatcgtggcggtgtgtcagaaggacaaatgaaacaggtagcgtggccggagctgatagccatcaggaaggcctgtatcagtctggaggaggattacaggccgggcattacctacatcgtggttcagaaacgtcaccacactcgtctcttctgctccgacaaagctgagagggttgggaagagcggtaacgtcccagcaggaaccacagtggacagcaccatcacacacccgtccgagttcgacttctacctgtgcagccatgctgggattcagggaaccagtcgtccctcccactaccacgtcctgtgggatgacaactgtttcaccgccgatgaactgcagctcctcacctaccagctgtgccacacctatgtccgctgcacgcgctccgtctccatcccagcaccggcctactacgccagactagtggctttccgagctcgctaccacctggtggacaaagatcatgacagtgctgaaggcagccacgtgtcgggtcaaagtaatggccgggacccccaggcattggccaaggcagttcagatccactatgatacccagcacaccatgtacttcgcctgagctagcgagcacgtcagccagcccacccgcggattcccttcctttctgtctttttcatctcttttttttttttttgccagtctctccctctttctctctctttttcttctcccacatctttttctctctccttgtagtctgtctctttctcttcacactcactctaattttctgaatctgcaccaaagcggctcttggacgagggagacctgctgtgtccctatgtccagcaggtttttgtttcaaggaacaatcagccaaccagcgttcccaatcgagccgcctttcaaaccagcaatccagcactgcgatccctgagggtttccagtgcacaaaagaaaagaaaaaacgacaaaaaaaacaaacaaaccatacacacatactacaagttgagccattattttgagtttgttttttctatttgaatgtctgcactcttgtgtttgtaagatacactgagcaagggagtggattggcacaatctgtgtcagcgcagctctttagctctcccagctaagcaggactcttatctacttttacctcaaagcccctttgggcaaaatctgtcacaaggtcttgggtttattgggtggtggggagggaactctacaggaaaagagatggaggggagtcgaccttttgagaatgaaaaatatatatatagatatatatatatatatatatttttttttttttcctttttatgagcgtgtgttttaactttttctcctttacggtcttttacaagcgaggtgacctgggtgtcatgcccattactactttcctctcatctaagcgaagaatacgcaagtctgtgtgcgtgtgtttgtgtgcgtgcgtgcgtgtgtgtgtgtgcgtgcatgcatctctgtatatacatgtactgctgtatgagagtttgtgtatgcatgtgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagatttgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgagacatatgacttaaaaacaggcctccatagaggctggtgtgggtatttgtagtagtcctgggtcacttattaattgaaatgctttgaattacattttgaacgcgtatgtttgacgtgctgccagtgcagtatgggtgggatttgcacctttgggagccagctactcctttttgtgcctcaaaacatcactgaattccagaaaaaaaagtaactcaatccattttgagtagtaagtgaagtcaggtccgacgtgtagcagtagtaaccgtggtctggcctgtgactggctcagcattgggacctgttgaatggctgaaggcattaaacacagagtatggtcttatcagccttgctttctgtgtgaaaagcaggatcttatttttctttggacctgattatctgaaagattatatgatgacacggctggacgttgcttttcttcattttttttttttttttttttttgtagtagtttcaagggccggaaaccaacgtagtttttagaggtctcctttgctaatactggccaattcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcgtacctttatgcatttatacatacgaatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcttaaaaaaaaaaaaactgttgtttagaattagtagtttaccattgatgttgttgttgttatcgttgttgtcaatgttgttactattgtgatgatgaaattttacggt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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