2024-04-20 07:31:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035649229 2156 bp mRNA linear VRT 01-APR-2022 DEFINITION PREDICTED: Scophthalmus maximus vimentin-related 2 (vimr2), mRNA. ACCESSION XM_035649229 VERSION XM_035649229.2 DBLINK BioProject: PRJNA821077 KEYWORDS RefSeq. SOURCE Scophthalmus maximus (turbot) ORGANISM Scophthalmus maximus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061523) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 1, 2022 this sequence version replaced XM_035649229.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scophthalmus maximus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2156 /organism="Scophthalmus maximus" /mol_type="mRNA" /strain="ysfricsl-2021" /db_xref="taxon:52904" /chromosome="9" /sex="female" /tissue_type="muscle" gene 1..2156 /gene="vimr2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:118319119" CDS 29..1201 /gene="vimr2" /codon_start=1 /product="desmin" /protein_id="XP_035505122.2" /db_xref="GeneID:118319119" /translation="
MAMLRVSSYRKLFEDEHWNRSGGLGVQCAGQFRASFRRAAVDECDCDKLDLVAARSLNKEGLNQFAQDRTVIAALNDRLVGLIELARCFEEENESLECQIVELEEKLNSQQASSSITSTVAQPDYSLDAVLERLRKERDEILRDTEELHKELEGLQDGYEKAAQQRIFYQQERQDVAEEVDAVTAECLALREQVAIYEEQLANMEAQHTMAVGSLLEPADGTTGAVAAFGFCSPDMTPALDVKEYYCQLAESLQFKCGAAPSAVVRSGDRKQLEGGQAVGSRVENVPKIKDSSELKMLISELQKELTELEMCNAELEDEVEMKKAAYMEEIAELKCTIDEMRHKDADLQAQMTEQCEDYKELLSEKMARDMEIVAYRSLVEEEEERLCYL"
misc_feature 227..1186 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 2156 /gene="vimr2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttgtagcccagtttgagtgtctgaagccatggccatgctcagagtgtcgtcgtaccgcaagctgtttgaggatgaacactggaatcgcagtggagggttgggtgtgcagtgtgcagggcagtttcgggcctcgttcaggcgtgcggccgttgacgagtgtgactgtgacaagttggacttggtggctgccaggtctctcaacaaggagggtctgaaccagtttgcccaggaccgcactgttatcgctgccctcaatgaccgcctggttgggcttattgagctggctcgttgttttgaggaggagaatgaatcacttgaatgtcagattgtggagctagaagagaagctgaacagtcaacaagcctcttccagcatcacctccactgtggctcaacctgactacagcctggatgcagtgttggaaaggctgcgtaaggagagggatgagattctgcgtgacactgaggagctgcacaaagagcttgaaggtctgcaggacggctacgagaaggctgcacagcagagaatcttctaccagcaagaacgacaagatgttgccgaggaagtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacacgatggcagtggggagtctgctggagccagctgacgggacgacaggggcggtggcagcttttggattttgcagccctgacatgactccggccttggatgttaaggagtactactgccagctggctgagagtctccagttcaagtgcggtgcagccccttctgctgtggttcgcagtggtgatcgaaaacaactggaagggggacaagccgtagggtcaagggtcgaaaacgtgccaaaaataaaggactccagtgagctgaagatgctgatttcagagctacaaaaggagcttactgagcttgagatgtgtaatgcggagctggaggatgaggttgagatgaagaaggctgcgtacatggaggagattgctgagttgaagtgtacgatagatgaaatgcggcacaaggacgccgacctccaggcgcagatgacggagcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggagattgttgcctacaggagtctggtggaggaagaggaggagaggctgtgctacctgtgagatgagggcgaagagtgagactgggcggctggagtttggctggatgctccccccacacatggattagaaaacagacaaaagaaaattgtgaaaaccagacccaaatcaacggcgctaggatgaagcttaaggtaccaacacagcagtttgagcagatgtaaacttatcatgacagattaatgctgtctggaggactaagccgggccattgataaccggccgctggcagatgaccccgagactccaagaaagatggaactgtctaaaactgggagggaggtgggaggatgggcgctctgcgaggagtgtgtatccgtatagtgtctggcagggatatttccttaagtgtgttttatcttttccagcttactgatataattcataaatgttttgtccccactttgtcgaacaagtctcgcacacagacacacacacgcacacaaacacacacacacgctaaactgtgcggctccgtggagttatttcccctctggttccacctcgtccatcactcacactctgtctgattaccagctcttaacctttgaccccctcactgttaacaaacatattgaaaggtccctctcttcagtgactaaaagtgtctcaccggctttttgcttttacagtcatgcatttatgttggttttacatataactgtttgcttttcaaatggttcatgaagttgttttcctgcagctcacacacacagagcacctgcatccctctgcgagaaaagtctgtgtgattcattgttccttctttgaaaagcaacgtcccaatttgctgttatttcagaagtaaacatttggtagtacacgacgttcttaaccttttccttattttctgcatgttgtctgtgataaatcacttttggttcctgcttctgcacatacagacagaatgtgctttggatttaaattcaataaaagtagttgcttgagtgatcacctca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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