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2025-07-10 01:02:13, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_034344404            1176 bp    mRNA    linear   PLN 14-MAY-2020
DEFINITION  PREDICTED: Prunus dulcis dr1-associated corepressor (LOC117615337),
            mRNA.
ACCESSION   XM_034344404
VERSION     XM_034344404.1
DBLINK      BioProject: PRJNA631757
KEYWORDS    RefSeq.
SOURCE      Prunus dulcis (almond)
  ORGANISM  Prunus dulcis
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae;
            Amygdaleae; Prunus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047650.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Prunus dulcis Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Prunus dulcis"
                     /mol_type="mRNA"
                     /db_xref="taxon:3755"
                     /chromosome="1"
     gene            1..1176
                     /gene="LOC117615337"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:117615337"
     CDS             71..895
                     /gene="LOC117615337"
                     /codon_start=1
                     /product="dr1-associated corepressor"
                     /protein_id="XP_034200295.1"
                     /db_xref="GeneID:117615337"
                     /translation="
MAEEQNVAREEDNIAGEEKAEQAEENAEQAEENAEQEEDDPEKAVENAAVKEKAKVAQEEENAEPIRSENSQIRPEFPNTRVKRIMKLDRGINKVNSEALLLVSCSAQLFLEFLAERSAEVATEKKRKIVKLEHMRVAVKRHRPTSDFLLDELPVPSQPSDHQPTDRSSSRTVSHAPAPARRDRNRSRAVSDKPAPAGTRRIDHFFRTKEIPIQTEQSLIETEEASIEIDEAPIETDEGPIETDEASIETDEASIETDEGPIETGEGPIETNES"
     misc_feature    293..529
                     /gene="LOC117615337"
                     /note="histone-fold domain found in DNA polymerase epsilon
                     subunit 4 (POLE4) and similar proteins; Region:
                     HFD_POLE4-like; cd22929"
                     /db_xref="CDD:467054"
     misc_feature    order(311..313,323..325,332..337,341..358,362..367,
                     371..379,383..418,452..466,500..502,512..517,524..526)
                     /gene="LOC117615337"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467054"
     misc_feature    order(332..334,338..340,362..364,395..397,404..409,
                     416..418,428..430,437..442,491..502,509..514,521..526)
                     /gene="LOC117615337"
                     /note="catalytic subunit binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:467054"
ORIGIN      
ttcaaaaccctaacacaacattttcgtttttcgattacttattcctgaccagagagcgtcgcaaccatcaatggcagaagagcagaacgtagcacgagaagaagataacatagcaggagaagagaaagcagagcaagcagaagagaacgcagagcaagcagaagagaacgcagagcaagaagaagatgacccagaaaaagcagtagagaatgcagcagtaaaggaaaaagcgaaggtagcacaagaagaagagaacgcagaaccgatccgatccgaaaattcacagatccgacccgaatttccgaatactcgggtgaagaggataatgaagctggacaggggcatcaacaaggtaaattcagaagccttactccttgtatcgtgctccgcccagctcttcctggagttcctggcggagaggtcggctgaggttgcgacggagaagaagcgcaagatcgtgaagctcgaacacatgcgagtcgccgtcaagaggcatcgcccgaccagcgatttccttttggatgagcttcccgtgccctctcagccgtccgatcatcagcctactgatcgaagcagctcgcgcaccgtttcccatgctccagctccggctagacgagatcggaaccgctctcgcgccgtttccgataaaccagctccagctggcactcgccggatcgatcacttctttcggacaaaagaaatcccgattcagaccgaacaatccctaattgagaccgaggaagcttcaattgagatcgatgaagcccccattgagaccgacgaaggtccaattgagaccgatgaagcttcaatagagaccgacgaagcttcaatagagaccgacgaaggtccaattgagaccggtgaagggccaattgagaccaacgagtcctagatcttcgttcgttctttgcctgtcgtaaagaagcaaaatcattttgtttggtcaagttgtaattgtgagaaaccaatggaaaatatctgatggacacaaggagattaattctaatttttctttataatcaattttctatttttcctatggatttgatatttatgattgacctaagcactgcagtgaagctccacggcaatggggggaaaatctctaccgttctgctcccagcccatgtatgtttttgtgttgtttaatttaatgcaaaagttctttacttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]