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2024-03-28 19:36:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033352045            3882 bp    mRNA    linear   INV 23-FEB-2022
DEFINITION  PREDICTED: Belonocnema kinseyi protein argonaute-2-like
            (LOC117167226), mRNA.
ACCESSION   XM_033352045
VERSION     XM_033352045.1
DBLINK      BioProject: PRJNA623416
KEYWORDS    RefSeq.
SOURCE      Belonocnema kinseyi
  ORGANISM  Belonocnema kinseyi
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Proctotrupomorpha; Cynipoidea; Cynipidae; Cynipinae; Cynipini;
            Belonocnema.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_046657.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Updated annotation
            Annotation Name             :: Belonocnema kinseyi Updated
                                           Annotation Release 100.20220217
            Annotation Version          :: 100.20220217
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; propagated
                                           RefSeq model
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3882
                     /organism="Belonocnema kinseyi"
                     /mol_type="mRNA"
                     /isolate="2016_QV_RU_SX_M_011"
                     /host="Quercus virginiana"
                     /db_xref="taxon:2817044"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="whole body"
                     /dev_stage="Sexual adult"
                     /country="USA: Houston"
                     /collection_date="2017"
     gene            1..3882
                     /gene="LOC117167226"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 95 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117167226"
     CDS             249..3554
                     /gene="LOC117167226"
                     /codon_start=1
                     /product="protein argonaute-2-like"
                     /protein_id="XP_033207936.1"
                     /db_xref="GeneID:117167226"
                     /translation="
MGRKGKKKPSGDSGPAGDAPKPGTSATSGDGLPPQQPQGGERQEGAPVWRAGRGRGSGPQQQGPQQRPGQGPPPVGAFQVQPRPAWQPQGQQPAQAQQQRTPWGAQQQTPFQQQEKPAGPSQVQQPVQQQQKSAWQQKQPQQQQKPVGQQQQQQRPVAQQQQQQRPVAQQQQQQRPVAQQQHQQRPVSQQQQQKPVGQQQQQPGPQWRKEPFPVQQQAQAQQQKQQQPQQRQPRQAGDRASPPTKEMARMSVVDEPFPTTKQSSPTKSSIPDHLARALVEKIPLRKTEGKTGRPIQVFVNMMEIKFGPNFRTDIVHYDIVFNPETPRYLIRPAFQALQQQHFPTRHPAFDGRKNVFSAGRLPFGDTMEHDVEVHNEDGRPKSFKITMNKVNEIDLKWLKNVRRGYPEGERDIISVQALDIILRQAPYQNLCVTPVGRSFFSQPRGRPVDLGNGLELWVGLFQSAVLGWKPYLNVDVAHKGFPKPQAVLDAMGELCRSNGVPTAQEVNNNREEIERYLRKLKVTCMIPNQPDSRRTYTINGLVRCARDNFFEHNGNRVSVEHYFQIEKKYRIRYTDIPCLHVGPHQKNIHVPAELCTILSGQATNKKMNELQTSNMIRQAATPADARRQKILDTFNAVRHNHSPCMKEFGLSIGGEFEKVNARVLNAPTLTYNEQDRDVRVMKGVWRASRFNVGKDLPDESWTILNLDNRTREDALRNLEQLLRGGASSLGMNIGRAVTPYAQMQPPTRNLQEIIKFFNEAKARKLRLVFVVVPDRPPNVYSKVKQVAELNVGVLTQCLKSFTVQRKLNPATVGNILLKVNAKLDGVNHTLHKTSKPRCLFEPCMIVGADVTHPAPDAMGIPSIAAVAASHDPKAFKYHIEIRLQPPRAEIIQHLEEIMIIQLKTFYQKTSHKPRRIIFYRDGVSEGQFPQVMHHELTAIRNACRKVEPGYEPPISFFVVQKRHHIRLFPADARNSDDRNGNVQAGTIVDTEITHPSHIDFYLVSHASIQGTARPTKYRCLWDDNKMSEDEIEQLTYYLCHMFSRCTRSVSYPTPTYYAHLAAFRARALTQDVNIDVNNLENEQKRKLTIKEDFLNNPMFFV"
     misc_feature    1269..1514
                     /gene="LOC117167226"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1548..1697
                     /gene="LOC117167226"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1770..2096
                     /gene="LOC117167226"
                     /note="PAZ domain; Region: PAZ; pfam02170"
                     /db_xref="CDD:426635"
     misc_feature    order(1854..1856,1896..1898,1923..1925,1935..1937,
                     1989..1991,2010..2012,2016..2018)
                     /gene="LOC117167226"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2175..3446
                     /gene="LOC117167226"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2586..2588,2598..2600,2634..2645,2652..2654,
                     2679..2681,2688..2690,2700..2702,2712..2714)
                     /gene="LOC117167226"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2793..2795,2799..2801,3009..3011,3423..3425)
                     /gene="LOC117167226"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
caccggcagtctgacatcttcttttttctgactgcagattggatagacagagataaaagaacatgcgagatgtagatgtgtacagatcactgagatgaaaacagaagacgtgtcgtgtcaagtcaagaaaagtatatagtcgtaaatttggctttaaaaaatcttttttttttgtgtttatcattgcgaaaagtgatctgaaattgaatgtgaatctgtgaactacaaaaggaaggaaatttcctaaaatgggccgaaaagggaagaagaagccatcaggggattctggaccagctggagatgccccaaaacctggaacatctgctacaagtggggatggactacctcctcagcaaccgcaaggtggtgaaaggcaggagggtgcgcctgtttggcgtgctggtagaggaagaggaagtggccctcaacaacaaggcccgcaacaaagacctggacaagggcctcctccagtaggtgcttttcaggtacaaccaagacctgcttggcaacctcaagggcagcaaccagcccaagcacaacaacaaagaacgccttggggggcacaacagcagacaccattccaacaacaggaaaaacctgctgggccatctcaagtgcaacagccagtccagcaacaacaaaaatccgcttggcaacaaaagcaacctcaacaacaacagaagcctgttggacaacagcagcagcaacaaaggcctgttgcgcaacagcagcagcaacaaaggcctgtcgcgcaacagcagcagcaacaaaggcctgttgcgcaacaacagcatcagcaaaggcctgtttcgcaacagcagcaacaaaagcctgttgggcaacagcaacagcaaccaggtccacaatggcggaaagagccatttcctgtgcaacaacaggcgcaggcccaacaacaaaaacaacagcagcctcagcaaagacaaccaagacaagccggtgatagagcttcaccgcctacaaaagaaatggcaagaatgagcgtagtggatgagccgtttccaacaacaaaacagtcttcccctacgaaatcatcaatcccagatcacctcgcgagggctttggttgaaaaaattccgcttcgcaagacagaaggaaagacaggtagacccattcaggtctttgtcaacatgatggaaatcaagtttggtccaaacttccgcactgacatcgttcactacgacattgtatttaatcctgaaactcctcgatatttgataagacctgcatttcaagcattgcagcaacagcattttccaacacgacatcctgcatttgatggaaggaaaaatgtcttcagtgctgggagattgccctttggagacacaatggaacatgatgtggaagttcataatgaagacggaagaccgaagtctttcaaaattacgatgaacaaagtcaatgaaattgacctgaaatggctgaaaaatgtgagaagagggtatccagaaggcgaacgcgacattataagtgtacaagccttagatatcattttacgacaggctccttatcaaaatttgtgtgtcacgccggtgggaaggtctttcttctctcagccacgcggtagaccagtggatctcggaaatggccttgaactctgggtgggtcttttccagtcagcagttcttggatggaagccttacttaaacgttgatgtggcccataaaggatttcctaagccacaagccgttcttgacgccatgggcgagctctgtcgctcaaatggggttcctacagcgcaagaggttaataacaaccgggaagaaattgagcgctatttgaggaaactaaaagtcacttgcatgattccaaatcaacccgattcaagacgcacctatacaattaatggattggtcagatgtgcaagagataactttttcgaacacaatgggaatcgtgttagcgtcgagcattattttcaaatcgaaaagaagtaccgaattcgatatactgatataccttgtctccacgttggaccgcatcaaaaaaacattcatgttcctgctgaactctgtactattctcagcggacaagcgacaaataagaaaatgaacgaactccaaacttcgaatatgatccggcaggctgcgacaccagcagatgctcgaaggcaaaagattttggacacgttcaatgcagttcgacacaatcatagcccgtgcatgaaggaatttggactctcaatcggaggagagttcgagaaagtgaacgctcgagttctgaatgcgccaacgttgacctacaacgaacaagacagagatgtccgagtcatgaagggagtttggagagcttcgagattcaacgtaggcaaagatttgcccgatgagagctggacaattttgaatctggacaacagaactcgagaagatgctcttcgaaatttagaacaattgttgagaggaggagcctccagtcttggaatgaacatcggaagagctgtgacgccttacgcacaaatgcagcctccaaccagaaatcttcaggagattatcaagtttttcaatgaagcaaaagctagaaagctgcgccttgtctttgtcgttgttcccgataggccgcccaatgtttacagtaaagtcaagcaagtggctgaattaaatgttggagttttgacccagtgtctcaagtccttcacagttcagagaaaattgaatccagcaactgttggaaatattctcttgaaagtgaacgcgaaattggatggagtaaatcataccttacacaaaacatcgaagccaagatgcttattcgaaccgtgtatgatagttggtgcagatgtgactcatccggctccagatgcaatgggaattccttccattgccgcggtggcagcaagtcacgatccaaaggccttcaagtatcacatcgaaattagattgcagcctccaagggctgagatcattcagcatttggaagagataatgattatccagctgaaaactttctatcagaaaacttcacataaaccaaggcgaattatcttctacagggatggagtcagtgagggccaatttcctcaggtaatgcaccatgaactgacggccatcaggaatgcctgcaggaaagtggagccaggttatgagcctccgatttcgttctttgttgtccaaaagagacatcatattcgccttttccccgccgacgcgaggaatagcgacgacaggaacggaaacgtccaggcgggaacgattgttgatacggaaatcacccatccatcgcatattgacttctaccttgtgtcacacgccagcattcagggaacggctagacctactaagtacagatgtctttgggacgataacaagatgagcgaggacgaaattgaacaactcacttattatctgtgccacatgttttcaagatgcactcgatctgtcagctatccgactccgacatattatgctcatcttgcagctttcagggcaagagccctgacgcaagatgttaatatcgacgtcaataacttggaaaatgaacagaagaggaagttgacaatcaaggaggatttcttgaataatccaatgttcttcgtctagaatttgtgaaggagtaaaataaatatatttatatcagcatcggaataatccactgcttcaattttcatattttatgcttgtttggaaaattacattcaccattattacatgtcaagagtagagagaagaatgtgatctaaacttagtaagtagttatatcgactgataaagtttaaacactacttctctattttgtattacgttataatttttacgcattatgctgcgcatatgtataatctatctttcaccagttttcttaaatattgcgtaattaattttcttttgttttttgagatttgtatttaatataatatttttaaatgta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]