2024-05-04 20:48:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033200186 2381 bp mRNA linear PRI 28-MAR-2020 DEFINITION PREDICTED: Trachypithecus francoisi retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_033200186 VERSION XM_033200186.1 DBLINK BioProject: PRJNA614514 KEYWORDS RefSeq. SOURCE Trachypithecus francoisi (Francois's langur) ORGANISM Trachypithecus francoisi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Trachypithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022681470.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Trachypithecus francoisi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2381 /organism="Trachypithecus francoisi" /mol_type="mRNA" /isolate="TF-2019V2" /db_xref="taxon:54180" /chromosome="Unknown" /sex="male" /tissue_type="muscle" gene 1..2381 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 6 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:117076548" CDS 187..879 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_033056077.1" /db_xref="GeneID:117076548" /translation="
MPAPVDGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGTMAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(406..420,424..426,475..477,493..495,532..534, 538..543,550..555,559..567,571..576) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(412..414,421..423,541..543,550..555,562..564) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 415..573 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ggcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacagagaaggaagaacagacagtggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggatggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcattcgaggcctcccactacccagatgtatacagccgcgaggagctggcggccaaggtgcacctccctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgtcgccaggagcggctggagtcaggctcgggtaccatggcagccccgagacttcccgaggccccagcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggacctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcctaccttcgcagacggctttgccctggaggaggcgtccctgcgactgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcctgggccccctcctcggtttgacccgagagctggagacgtgccctggtgacagccaccaagccttggcctaggctgaggtcatggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcctctaccccatcgccacccgtcctgctggcagcggaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccggggacgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgtgagtggcggggccgctgactctgtaagatgagtctacatctctctgccactcccactccccatcagcagagctgcccactctccaggctcccggtccccccgaaatgacagtaacagcagctcctgcgagcctggtctcctttcagggtgcacccaccatgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgttagcccattctacagagagggaaacgggggctcaggcaggaagccaggtccccaaggccgcacggctaggagtgggtggagctgcctttcaggtccatcaccagccccaccatctgaggcagcaggttctggagggagggtggggccctcgtgtggaggtgggctggtgctggcggtgtcgtcgtcagcccctgttcctcgcgtccccctagaccccaggccccgtgcatgtcccccagccctgcggaggcacggccggcgtctgctctgtccgacacagttgcattgcccaagagctctaagcaaggaggctgtcgcagggccgagaacccgctgtgactggcaagcgtggctggcccagcgcagcaggaggggccctgagccatgggatgtgacagtcttgaccagggccaccccctgggacataagtgcggcaccagggcaggagctgcagtagctactctcctcgtctccagcccgggctctccaaatcactcccagatcactggggcaccccatctccaggcggcacctcacacaccagtcctgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgtactcccagtgctttgggacgctgaggtgggaggattgcttgagaccagcctgggtgacatagcaagacccagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagcaacccgagaagctgaggcaggaggatggcttgagcccagaaggttgaggctgcagggagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaacacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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