LOCUS       XM_032678526           10029 bp    mRNA    linear   VRT 29-FEB-2020
DEFINITION  PREDICTED: Chiroxiphia lanceolata lymphocyte activating 3 (LAG3),
            transcript variant X3, mRNA.
ACCESSION   XM_032678526
VERSION     XM_032678526.1
DBLINK      BioProject: PRJNA603801
KEYWORDS    RefSeq.
SOURCE      Chiroxiphia lanceolata (lance-tailed manakin)
  ORGANISM  Chiroxiphia lanceolata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Chiroxiphia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045638.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chiroxiphia lanceolata Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10029
                     /organism="Chiroxiphia lanceolata"
                     /mol_type="mRNA"
                     /isolate="bChiLan1"
                     /db_xref="taxon:296741"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="isolated red blood cells"
                     /dev_stage="adult"
                     /geo_loc_name="Panama: Isla Boca Btava"
                     /lat_lon="8.2166658 N 82.2666656 W"
                     /collection_date="14-Apr-2017"
                     /collected_by="Emily DuVal"
     gene            1..10029
                     /gene="LAG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116782199"
     CDS             8001..9521
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein isoform X1"
                     /protein_id="XP_032534417.1"
                     /db_xref="GeneID:116782199"
                     /translation="

MRPMSLVLFLTFVLLAFSAGHILAGLAEGESREQKIWVREGSSAVLPCHLSPRKMRKSLKQLPDKTSVQWKRHGGSVHQESHGVLEVGYSGLQKTALLMKPRVSLQDSALHNGNFSLRIEPVRSEDAGLYEARVQYNSEVHSCHVELGVVTVTLSPPNPVEENELLLMSCNSSYRASLVEICWFHNGHLGPPSRTFCSSPGALSILRPAMSDAGSWRCQLRYSDNEIISATYNLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQINTVTAHWSHLAGGHLQDWDIFPNLSNRNFPLHLPAVGPGDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLGSVPTKSKLAVATPQNVESSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGGVEYELQITSAQVSSPPAIFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIAVPGPWKSMKENQKGKIQQTEC"

     misc_feature    8100..8441
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    8130..8144
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8199..8213
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8343..8357
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8385..8402
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8454..8669
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8496..8510
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8538..8552
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8601..8615
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8643..8660
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8733..8999
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    8763..8777
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8820..8834
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8937..8954
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8997..9245
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      

tttgtttttcacagaccaggaaatgctgttactcttggtatggttatttttttttccttttgaataactactcttgagccagtatgactgtagcctctttttccattattaaggcttctgaactttactttggctcatgattggaccatattgcccatatttcctcctctgtagaagctcatctggtcttacagttcaaacagggggcatacagagcccttggggttaccagtccttcagagtgacttttattttgacttaataagcaacacacagaagaaaattatagtaatttaaaaaaaaaaaaaaaagaaaaagaaaaaatagaaactcctctatctccttcaagtctggaaaaaatgagccctctaagcacctgtatctagggaaaaaacaaccagtccttgccaaactcaggggaaagtccccacacccacatgccatcaccacctcagttcatttaagtccaggagatttttccttccttttccctgtgggttatgtgcctcagctcaggagttatgctcctccactgttttcctctactggagttttcttgcagagcaagaccggctggcttttatttttgagtcttaaaaaaggcactcatgaactctaagggaagccctctcatcagggctgtgagtaagggaaaaacctagggaaatatgaatagatagtgttttattctcataatggtgatcatcaagcttggctccctcattcctgcagagagtctcatatcctagggctgagcaagaggatgccatcgaccatttctcacgccagcactctgcaggtggtgaataggccactacaagagttcttcccatgtcaaggccttgctgtgaaaaacacgtacctaattttcagccagatttttggttttaattttgagcctctggtcctccttatgttcctctgctggagtagagaatctacctctatttcacatcttcttctcatgggaagaaaacatcaaagatggattgtaagagcataaaaatggtcgtaccaatggtctctctatggtgctctgctatggccaatacaagatccctaaggaaagacattgagaatcaaggcatcatgtagaagcttcctgcaagcaacagtcaaggacatcctgagctggcagtcataccagttcatcacattcaaaagccagtgaggaactgatcctccacaaattacctaatctgtatttgaactcatttatactcctgctctccataacatcctaacatcctctaacaataattacgctgtctttgtgacatgcaaaatgaatttcctcttgtttgcagtaaaattgctgcctgacctcaccactgtttccttcagattaggtaaaagagatcaagcatctcaagtttattcatttcaaagcaagatcttcaggctcccaagtcagagttggtttggttttatttttgtaccactctgctaaatccttttcccacatccattttcaaaatatggacacgttccagtaacttgtgctgtaaacagaggtaacgcaatctgttcactccgtgagatcccatttaatacagcatgtatcatctatctccctccctggagccttgtcttcccaggatactgtattatgttgcggaagtgtgattccacatactttgctcctccatgtagaaccttatgttttaattctaagcgtgattttaccagaggttttaggaggtagttacttcccattaacttggccaaatatatgcaccgtgccaggagagacagtcacacctgcagagccctcctaaccatattttgtcattgtaagacatccatgaacatcagaaagcatttagatgttgagcagatcatgtgacagcctagcactggaagctcacgtagtctgaatttctaggacactttcatctcatcagcaaagcgtctgaagtatttacgcagaacacaaaagcattagctgctttatcttctactctcacacatgctgtgcagctaaagagagtcctttggtcttttgtggctttctgagaaaaacctggcagagaagcctataagagtggagagagctctgctcagcatggaatgttcatctcctgtagaatgggacctgacacctgcaaacagaaacttcttagcaccagggaaaattatcaatggcaccaaacaaacaaaaaaaaaatcaagcttaaacccatgttttctgcatgtggcctcaattgcaccacagtgaccagctcctggcagaacctcctaacatttagttggctctctgtcttggaaaaccagacctctcccagccctccttgtgacacaggaggtctcaccccttcttgggaattttgaagtccatttatagttccatctgtttggtcccagcctcctttgagggtaaggaagatttagatcttacaccaagaaagcatgctgtatgtgccagcacagtgagaatgggggtagctccagagccagaggggtctctttgcagtgctaaaggcaagaacacagcaagcagtgattatccataattggaagtgctcaggattttcctgagcctggccctgagcaacccagtctagtctgagagtcactctgctgggagcagaggggtgaaatagagccccagaggtcctttcccacctgaatcttcctgtgatactgtgactaacaaacaagtgggtttatttgattttgtggtgtttttcttagtgaggcagtagaagatatcttacaaaaggatgtaggctgctacctgccatgaggtgccaagtggagaggaaattgaaaaaacagctcagttgccactacattctgaattgcagtctggcacacaattgtgttaatccagcacaaatgcgtagtgttgcagagaggggcaatcccatcttccctttcatctctcctgctgcctctcttttgtcaacactgatgagcagcagagaattgatccagctgaaaactaaactataaaggaataaatccattttgatttacaatgagccctttcagtttaaaaatgcaccatctccctccctagcaattttttgttcaaagtaaagtggttggggatcaccaaatcagagactttattctcttcaggactactctggagcactgctgtgcccctccttgctgtgccatcatccacagcaactttcccagcgattgtattcttctgcaaatgatttttcatagcatcactgctcctttagttaccctctactttttcatatctagctttcccactaagaaagaaacaacatattctctatttagcctgcagcttccagagttccaatgtaccatgagatatgggctcctgttctcctgccatgatgcaccatgaaaacacagcatgtggatcagacccactttttcattgttcctggggacacaggcaaatacgcctagagccagacccctctgtgctctgagcaatgctcatcctccagcatgataaagtgcctcttctctgttggagaaacccaggttactttccagagtagaacacagagaggatttgagccccatgagcagaaggcacatccttctgtggcagtttttctctgaagggatactgtactgtcagttgagagcaacagcagcaataaggatatgagcctggaacatgtggattggcctttctctcttttatggcattttcagagattttgtttgcttgatatttctgctaatgctcacctgctttctgggctatccctggtgtccagcacttgtatgtcatccaactctgctgtgggcactggagcttccagtccactggatcccaaggaccctgcagatggtcagattctttctctccaggtaccccaggaaaaacacattttgggagtcccactctcagaccaaggttcagctcccatcaaagtactcttcagctcatacctgagttaaggcaatctatcaggaccactcagttgctgccccagcttctcagcaacacgttgggtcagtgcctgactccttcacctcagtgtcaaggtcactgtaactaagagcaaagctggcacgtgtctcccatccctctttgctcttgaggaaacccagtgcagccctgggatgtttgggaggctattgcatattttttgattgtattagaagcttgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacagaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttctgaaagagaatagttacacagtcctccacagcaaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggaggggtttttagcagaaatgcagcccacaactttactcagatccccccaatgttgtttctgactttctaattcagagctgagtattgtcatacaaagagtactcaccttctagcactgtaaagaaagagactgcagatttgtccaaagaccccataaagctatgttttcttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgccatatcagagatctgtggtaactcaggcactgcccccctaaaaaggaccctttcaaaaaagcctcccagtcaggcagccaatcactctgcctcctcctagcacttctgcagtggcacattttggttttacccagatctactgggagatggaaactttctcttttccggtgctcctctcctcactgctttttgggacctgtcatctcagatgaatgcgtcacttctccaagaccaccctctgatgtgttgatgtgtgatgtacccaacccctggggagataacatgccacttccaggcatcatgaagcatgtttggtatccaccctggacttaatttcatatacagaatgcacctctggttggcaccatggccctttgtgtgggaaaagtggcttgcattcctctacctcaggggtgcctattttgatgcattaccctattgtgcatctcacagaaagcctgccaagctgtggacaccagctctttctgcctcacggttctgctgcttgacctctctgcagcaacaaggtgttgacatgggaaccactgcatctgtcccaagtgcccagagaagggcagctccactacttcctctctgcagctgagcttagatttcttttagttgcctaagcttcccagtcagtgccagaagtctcacagttaatcccagtctgatccctgaaaaccttgttgcctgtgcaggtgtctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccagaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattagtaaggaacttggttttgcctgctgtgtttgctttagcactggacaaacagcaatcaggatgttttacatgaggtccttctggcaagcactctatctcaggaacgcccagacaagctgataaccccgtcttcaagtcatggtatggtttcctggatcagctgaagtctgaaaataaattctagagcacctgagaaagtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcactcagagaaaaacacggtattacagaaatctggaaacgcagtggaaaattccttcagcaagactaactcaatgatactgcagaacagtgttttctattcctatttttcttggtgagtgtagtttacatccataagacataccaagagagacaagaagagcaatgtattaaggctgtgcacaagacgactgctgcggtgaagtctggaacctggctgaagctactaatgcctaacatggacaaaggagcatttagtgagctgggcttttacgtccctgcccttggctactcctgttgcagcctgcccctcatcccccatggctctgccagggtctcacacatccctgtcagcctctctgcccaggggacccacgtgggcagttctgagaagatgtccctgtgctgatctctctgtggtcactgtcatctgtgcctcggggtcccattctgggagatgacgaaaatgccattcgagggagtcagcatttaaaatgggtcgttagagagaaacgtcacagtgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaatcttccttttacaacatgctcactcagcataataacccctcggccccaaacacccctccccagtgccagtgccaggcagctcctgtcattttcctaagctctccatcagtctcttgtgaccacctcttgggaagctgtagcaggatgggactacgtcctctgctttgctgagtcttagaagagataagcatttcctagagcatggattcctttaaaagtggttttgagggctagagtggaatagtgccagggtgccaaggctacaagagcagagagagttgagatggagggagagagcaatgagctcagtgtgcccctcagtgaagccaggagaggggaagaagatgatgctggactgcagcaatctatgtgtctccccaccatggttccaactcccttctctctctctcaccttcacccacacactcacaccattcttgcactgctgattcaagggaaagaagaggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgacaactgtcacaagttctcccttatctttgctcctctctttctctctcatgtgatcccatggattgttttacacaagagggcatgtgggaacactacaaagcagtccctcagtgacatggaggcacatgaggttgcacctgcacaccaatcccactcctcaggaggttggagagccatgtgtgatgaaagagatgagagctgtcactacaacaggggtctgctgaagcgaggcatagcactggccctcttttgtcctccaccttcaccacccagctgaggaaaaccagagagcaaacaaggatccttccacagttgaaaagtggccactatgagtcacctcccttcccccagcctgaggaaaagccccaacacttgggggatgagccaccgaggggcttgggtgtctgacacatgtcacgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtgggggttctctgagacaaaatgggtcccaggatgaggcacatggatggaaatgtattgccctatgtaaaggtcagtagcttaatggcagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgctggaggaggagggtcccttcctcacactcctcttcatgccacagtattcagcccctcttttcagttctgattccttcttctggatgctcctctctatctccttggaccacccgggctttgtcccatattggccctggactctagattgatgagtcacatgtgccctacttggagctcaccacagaccatttcctcacgctgcctgtgaactgaccaatgagaaaaagccaagaaattagctcatttggagtattaaagaaggaaggaaaaagaagatgaagaaaaaaaaaaaccaagaagaaagaacagcagaaataaagaccatcatgttctcgaaagccctgaaacaattagagggaagctgtaagagacggaaagatcaaaccaaaaaagctttggaccttgtcaagcacgaacccaagcaggtggcagcccctcgcctttcctggatgccaccatgaggccgatgtccctggtgctgttcctcacctttgtcctgctggctttcagtgctggtcacatcctagcaggattagcggagggtgaaagcagggagcagaaaatatgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaatgagaaagagcttgaagcagctgcccgacaagacatctgtgcagtggaagaggcatgggggaagtgtccaccaggagtcacatggggtactggaggtggggtactcgggcctccagaagacggcactgctcatgaagccccgggtgtcactccaggactctgccttacacaatggcaatttctccctgcggattgaacccgtcaggagcgaggacgctgggctgtatgaggcacgggtgcaatacaactcagaggtccatagctgccatgtggagctgggggtagttacagtaaccctcagtccacccaatcctgtggaagaaaatgagctgctcttgatgagctgcaactccagctaccgggccagccttgtggagatatgttggttccataacgggcacctgggccccccctccaggaccttctgctcttcacctggggctctctccatcctgcggccagccatgagtgatgcgggctcctggcgctgccagcttcgatactctgataacgagataatttctgccacatacaacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagataaatacggtgacagcccactggagccaccttgcaggaggacacttgcaagactgggacatcttcccaaatctgagtaacagaaacttccccctgcatctccctgcggtggggccgggtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgaccttggcagtggttacagtgactccaagtatccaaggaccagtttctgaggggagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttggctcagtccccactaagagcaagctggctgtggccaccccccaaaacgtggagagcagcagtgcccagatgggacctatcttgaaaatacccaaagtgtcacaaaaggatacggggacatgggaatgcagtgtatatggcccagaaggacaactgggaggagtggagtacgagctgcagatcacaagtgcccaggtctccagccctcctgctatcttcagtgggcaggttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattgcagtccctgggccgtggaagtcgatgaaggaaaaccagaaagggaagatccaacaaactgagtgctgacaggagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggcgccatgcagacctgtcaggggggtctagggatggcatgaacaatgcagaaggcattgggagctctgtatctgcagaggggctgggagctgtctaccagggcaaggcaagcctcactgctgcagtaaggtggcgagcagcacagatgctttggagctattgggagtatttgagccagtagctattgcctgctttagtgccaaatctctgcctactctttgcctctcctccgtggctcctctcacagtctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgcttgctttcttctccctctgcccgcacttccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatcta

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