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2024-09-08 11:40:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)

LOCUS       XM_032160239            9163 bp    mRNA    linear   PRI 26-JUL-2023
DEFINITION  PREDICTED: Hylobates moloch argonaute RISC catalytic component 3
            (AGO3), transcript variant X1, mRNA.
ACCESSION   XM_032160239
VERSION     XM_032160239.2
DBLINK      BioProject: PRJNA600985
KEYWORDS    RefSeq.
SOURCE      Hylobates moloch (silvery gibbon)
  ORGANISM  Hylobates moloch
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hylobatidae; Hylobates.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026652283) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 26, 2023 this sequence version replaced XM_032160239.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_009828535.3-RS_2023_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/21/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9163
                     /organism="Hylobates moloch"
                     /mol_type="mRNA"
                     /isolate="HMO894"
                     /isolation_source="EBV transformed lymphoblastoid cell
                     line"
                     /db_xref="taxon:81572"
                     /chromosome="Unknown"
                     /sex="male"
                     /note="Lionel"
     gene            1..9163
                     /gene="AGO3"
                     /note="argonaute RISC catalytic component 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 Proteins"
                     /db_xref="GeneID:116472937"
     CDS             85..1965
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_032016130.1"
                     /db_xref="GeneID:116472937"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    85..426
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(220..222,265..267,307..309,319..321,373..375,
                     394..396,400..402)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    559..1836
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(970..972,982..984,1018..1029,1036..1038,1060..1062,
                     1069..1071,1081..1083,1093..1095)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1174..1176,1180..1182,1390..1392,1804..1806)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      9163
                     /gene="AGO3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tggaaatgtttctaaagtttatttggatggaagtttagcatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtttgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaacgtaacaaggaggcctgccagtcatcaaacctttcctttacaattagaaaatggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttccctgtctgcaagtcgggcaggagcagaaacacacctacctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacagacaatcagacttccactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggctcatgtaactggacgcgtacttccagcacctatgctccagtatggaggacggaatcggacagtagcaacaccgagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatcgcttgttttgccacccagaggcagtgcagagaagaaatactgaagggtttcacagaccagctgcgtaagatttctaaggatgcagggatgcccatccagggccagccatgcttctgcaaatatgcacagggggcagacagcgtagagcccatgttccggcatctcaagaacacatattctggcctacagcttattatcgtcatcctgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagacacacttttgggtatggctacacaatgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagccgatgtcactcatccacctgctggtgatggaaagaagccttctattgctgctgttgtaggtagtatggatgcccatccaagcagatactgtgccacagtaagagttcagagaccccggcaggagatcatccaggacttggcctccatggtccgggaacttcttattcaattttataagtcaactcggttcaagcctactcgtatcatcttttatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagtcgtccttcacactatcatgttttgtgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtacgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagataccatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacaaagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtacttcgcttaaatagtccaagtatattctctgagaggaagtactgaaagatgaattgacatacaacgtatgtttccagtggagtcaattgagtaaggacacctccagccatacagaaaccaacactgtgtgggggccaaggtctgatccttatgttaatacaaggaagattgtttacttcatcaaggaacacagcatcattatgcaatatgaaaccagccaactgctttttgtgcggtctcctataggaagtatcgcaattgttttgttttcatttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagaaaaagtaaatgatggtttaaaaaatacacaccttcatgaataatcaaagtgatttttcaaaattatgtgtgcaaaaaatgtgcattcatctattcttgtaaaaggtgtctgtgtatttttaaaatatatacatccatacttcatatgcatatatatctagatctggattgataatagatatatatgtgtctgttatatattttagagttcattccactggggaactttctttcccttttattctacccccactaccgcctttatttctctatttcccttgccttcaccacctacatttttttcctaatcctaccagtgacattcaaatgttgacgtatctggttcgtttgaatataaaatatggcaaactagatttctacttttattttgcataccctactcctgactcctatctcatacacaattctgagttctcaactcttgatattactgtcttaagaaacaaaattttatatatatatatatatatatgtatgcatacatacacagacagacacatacacacacatatatatacataaaataactttctgtgagagtgtgtctctcccctcccgctcagaacatacatttaccatttgggcaatttgtatataagcagtagcaacctgcactattccttctcttttttctttttcttttttttttattttttatttttttatgagacagagtctcgctctgtcaccaggctggagtgcagtggcgagatctcggctcactgcaacttccgcctctcgggttcaagcaattctcctgcctcagcctcccgagtagctggtactacaggcatgtgccaccacacccaactaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatccacccgcctcgacctcccaaagtgctgggattacaggcgtgagccaccacacccggcctactattctttttctttagtgagtttgttaaagctgctataaatataaaacctgtcagaagttgtaactctttctctctgataagtgatgtgttttctgaagccttctgtttctatgggttatacatggaaattctttaaagattttataaagggtaaatattttaaaagattagaactctgtagggttgagacctctgaaattgagtagagagagagaagggtttgttgagggatttttttgttttgttttttgatagtttacttgctgcctctcataccttaatgtgattttcatatattttttatatatacatgtatgtgtgtgtatataaacacatatgtatgtgtttggaagtatagcttccttttcttttatatttattagaatagtgctttaataattatagaattgtattggcagcatcttttatagacatataatcatgtttattttaagaactgaccactcgtttttgctatcctttagtgcaataagcagttttaaaggaaagttgtgtctgtttgcatctttaccatggatagtaggaggaacaggcacctccataatttaaaagggcaaataatacagccttaatttcagaaggaaagttttgtaattttcggttttaaagcatatcttttaaaattcatcatgataaaaggctggatgcggtggctcatgcctgtaatcctagcgctttgggaggccgagacaggtgtattacctgagctcaggagtttgagaccagtctggccaacgtggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtagcaggcacctctaatcccagctactcgggaggctgaggcaggattgcttgaacccaggaggtggaagttgcagtgagccaagattgcaccattgcactccagcctgggcaacaaatgcaaaactccgtctcaaaagaaaaaaaaatcataatgaaaatgaagtgaaattgcctaaatgagtccaacttgaatattagaaataaagttgaacttttatataagaaataatcgtgaatagcttaacatatttaaattatttgcaaatagatgtgtttattgaagaatcatattggctagatgcccattttcatttactaaaatgaatcaggaaaatgcaagatgatattttaaaacttttgctaatgtatcaccagtgtaactttccttttaaaattaaggtgatagtaacaaaggaagttaggactttgatcattttaaatcagttaaatcactgaaatgtgggaaattgttttacaaaacttttattgattacactttaaggtgttaaaaagtactataaagctatcaaaaccgagtttatcagtaacattggattcaggggagctttgcactttgtaactcatgaaaattgcattttgattttttttttttttgcactggttcagagtatagatactacagattgtttccagtgggcattgttgttagcctttcagaattccatctgcacatgaaacctaatggatttaagatctttagtttctctcttacctgtaatccactattattgccaattcactgtattttgagcctaaaatctgagcccatgtcctccgacaggcatgaaatcttttgtccctctgccagaaaactacgaaagtactgtattttgtgtgttcattattttgaagtgtctgaaatgcaatttacaacactgttgcaaagaactttacaaaaggtaatatttgtatcgtatatacattttttctcccagccttctcccatctcctccagaaaaatttcctataaagatggatttttttacactgaaattttactgaatatagtcaggatcatgggcaagagaagaaaatagtatacccaagatgataaaaatttaattcatctatgcttgatcaatgtgagtaaaacatcttcctttatcatgggagctgcacagatttcatgtgggaaacttagggaatgactgtagataccctttctctatgtactctgtcacctaattttcagtcactcatatatgctagactggagcccttaatttaaatctatttggaaggacttttttaagatgaaaaatattttttctaaattataaagctttaccttttgagtgatttctttttaagagtgctcttacactagtcagctagtgtaagagctagtttaaagttgattaacttgaaagaatatgtatactatatttctattttgctaacaaatggtatattaattaccattggttcttaattacaagaaaacttgtgcttagaattttaagataaaaggctaagtgaccaatgcttcttgaaatttgtcctatttattgttgcacttctggtgtagaatttctaatcttttttattttaaaaaagttttgcttttttttaagttaaacatgaaattcacagtggcccttctgctcctgcccttgctcactaactatatcatgaatgctaaattttggtcttcttttttctatgatgcgtcttacaagactgactgtaaaatatcagtctggcaactagataattgattttcatatgaagaagagttgggagtttaatgtatattcttgatggttaatctgtctacataaagtgctgatacatgtattatattacagtatcacgttactggcatggaggaccatacacttccaatactgtagctgctatatttatttaagtagagtctgacagttactgcactaaacaataaggagataagcaggattcaaggctagtgttagaccctttttttcctaagagtaaggacacggaatatcaaagtaacaaagggtgctgccattttagtttcaatttaatatcaggatattctttgttttagaaatgtagattttgacttttacagtttgaaaaagggtacctcagcctcctcagtactggttttttggcacatttcaacagaaatattagattccctttatttttcttaatagtgatcttctaacaagtttcttggaaaaactattattctaagggaaatccctgtttataacctattaatatatttctattcctagaagagagtctggcaggggttctagtaggaattactgagtgtttcggaaggcacttgatagaggcatctctgctttccagcacagggattctcagccttctaaagatctagaccagtttccaagctagcttctccacagcccaccactgcctagtgtttatttgtgtattctctaatggattttaggaggataggccttctgacagacagaatcatgaaagacttaaggcatgtctagggaaataaacgctgacttgcccttcagcaggaatgactggcagcggatctctgtgttcaaggaaagggtgagcgctaagcatgccagtgatggatccaaagtatttagatggattgcagaccaggaattagagaccgtttgtgactcaaggaacttgatggatctgtttagagacctacatgaatttgccaagggcagtgatttttatgaaattcaagaagcaaacgacttggatacagctagaatatgttgcggtcttcctatttcaaacttgattttaatatttttaccaagaagtttaactgacaactctgcaaaattttcattcagtatcattaaacctgagttaaatgtttgcttagcttatccgcttagatgttcttctgttgaacaggcaggttgcccttaacagtaacttgctacttaaattaccttttattagttagtcaagctgcaaaaatatcattagtctggcatctttattttggctttatccatatgaagtattcattattttcattctttctgagaattcataaatgtcttaaagcttcagtaagaattgttgggaggtttgacatcaagtaacgccttcctgtgtagcagtataaccctaatttagaacccttgttttcctatttcagtcctcgtatttgatcatagaaaagcacttttgtgattctataggggtcaaaaaataagccaagaataggtaagtcagtacagaaatcagaaagtgagaattttctccaaaaaagcttttaaaaaagtcctgtttatactaagaacattctcgatcagttgcaatgttagaaatgatactgtgattagtgaacgccaagctgagtcccaggaagcagggagggggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtatatatataatctcacacacacacacaaagggaaaaattattttgacttttttcctacttttaaaatggtacatttaagtttataattttccatggcagtcaacataattttttaaactaagatataatggtcaaggcttgtgctaatattacctactactcattgacatttatattactttacccatcaaaactagtactccagatgtttacatcattgattaaatctcaagaatctttttttcttaaaatatggaagttaaagattttaatttgaattaaagacagaaggatgataaattcaatatagagggttgagatttaccggtgagaaaccctgttgaagtatcaggtaaatggtgtgataaaattagcatcctatcaaatcacctatccagccattggggtccctgccttttttagactaatttctaaggtaaccaaaatctgatgtatctatgttagggtctcagtaaagcaaagatgtttgtcagggcatagactcttgagttaaattttttaatcattttttaaagcaaggcggttcttagaaagtgccttttcagaagatggtgctgtagatttttatttttcaaatagcacgaagctaagaattttaaagataaattattttagaactccaagagtgtgacagtttcataaaaataatgttagttgttgtcctgaatctcctccaagggaaccaagaaaagcttttatgcagtaaagtatctaggtaaatgctcaccaaatttattttgtaaatttgaaaacaaaatatttagtagaattacctcttttaattcccaactgtgttggaggaaatccataatgcacataaaacagcaaacctacttaactaactttttaacaaggttatgggtatagtaccagtgtccaaagggaaatgtaacttgcctggaattataggcaacattttctaattaatcttttttttttttttttttgagacaaagtctcactctgtcacctaggctggagtgcagtggcgcgatctcagcttactgcaaactccgcctcccgggttcaagtgattctcgtgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccggcctaattagtcattattaagaaagactgctcataaaggcagtaccaaatcatcattcagatcagcttaagtgagaaagcaaaatgatgatctctattgttagagaaattttcttttctagacaccaaggaatattttaaatgattttttgttttttctaggatgcaggaactatgaaaaatgatgacaaggcatttaaaagggtatgatcagttaaatagaagtaggatgtgcaaaattgtgcttaaggggaaataagcaaaagaaaggaaaatagcaggacctttcatactaattagaaatgtagttacctaccagagggcaactttgctccataccaggaagcagtaaatagcagtaaatgatcatctaggcacttgtttcctgtgaatttggtgagcattcttccagaaaagaagactaaaagcaaacaacaacagaaaaaaaccacacctcagtaaccttgtatgctgcattatataataatgatagtaaaattatattgtttggagtgtactgtgtctgtttgcaaatatacatgcacattaaacttttttgtttttataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]