2024-09-08 11:40:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_032160239 9163 bp mRNA linear PRI 26-JUL-2023 DEFINITION PREDICTED: Hylobates moloch argonaute RISC catalytic component 3 (AGO3), transcript variant X1, mRNA. ACCESSION XM_032160239 VERSION XM_032160239.2 DBLINK BioProject: PRJNA600985 KEYWORDS RefSeq. SOURCE Hylobates moloch (silvery gibbon) ORGANISM Hylobates moloch Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Hylobates. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026652283) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2023 this sequence version replaced XM_032160239.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_009828535.3-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/21/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9163 /organism="Hylobates moloch" /mol_type="mRNA" /isolate="HMO894" /isolation_source="EBV transformed lymphoblastoid cell line" /db_xref="taxon:81572" /chromosome="Unknown" /sex="male" /note="Lionel" gene 1..9163 /gene="AGO3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:116472937" CDS 85..1965 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_032016130.1" /db_xref="GeneID:116472937" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 85..426 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(220..222,265..267,307..309,319..321,373..375, 394..396,400..402) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 559..1836 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(970..972,982..984,1018..1029,1036..1038,1060..1062, 1069..1071,1081..1083,1093..1095) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1174..1176,1180..1182,1390..1392,1804..1806) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 9163 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tggaaatgtttctaaagtttatttggatggaagtttagcatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtttgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaacgtaacaaggaggcctgccagtcatcaaacctttcctttacaattagaaaatggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttccctgtctgcaagtcgggcaggagcagaaacacacctacctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacagacaatcagacttccactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggctcatgtaactggacgcgtacttccagcacctatgctccagtatggaggacggaatcggacagtagcaacaccgagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatcgcttgttttgccacccagaggcagtgcagagaagaaatactgaagggtttcacagaccagctgcgtaagatttctaaggatgcagggatgcccatccagggccagccatgcttctgcaaatatgcacagggggcagacagcgtagagcccatgttccggcatctcaagaacacatattctggcctacagcttattatcgtcatcctgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagacacacttttgggtatggctacacaatgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagccgatgtcactcatccacctgctggtgatggaaagaagccttctattgctgctgttgtaggtagtatggatgcccatccaagcagatactgtgccacagtaagagttcagagaccccggcaggagatcatccaggacttggcctccatggtccgggaacttcttattcaattttataagtcaactcggttcaagcctactcgtatcatcttttatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagtcgtccttcacactatcatgttttgtgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtacgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagataccatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacaaagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtacttcgcttaaatagtccaagtatattctctgagaggaagtactgaaagatgaattgacatacaacgtatgtttccagtggagtcaattgagtaaggacacctccagccatacagaaaccaacactgtgtgggggccaaggtctgatccttatgttaatacaaggaagattgtttacttcatcaaggaacacagcatcattatgcaatatgaaaccagccaactgctttttgtgcggtctcctataggaagtatcgcaattgttttgttttcatttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagaaaaagtaaatgatggtttaaaaaatacacaccttcatgaataatcaaagtgatttttcaaaattatgtgtgcaaaaaatgtgcattcatctattcttgtaaaaggtgtctgtgtatttttaaaatatatacatccatacttcatatgcatatatatctagatctggattgataatagatatatatgtgtctgttatatattttagagttcattccactggggaactttctttcccttttattctacccccactaccgcctttatttctctatttcccttgccttcaccacctacatttttttcctaatcctaccagtgacattcaaatgttgacgtatctggttcgtttgaatataaaatatggcaaactagatttctacttttattttgcataccctactcctgactcctatctcatacacaattctgagttctcaactcttgatattactgtcttaagaaacaaaattttatatatatatatatatatatgtatgcatacatacacagacagacacatacacacacatatatatacataaaataactttctgtgagagtgtgtctctcccctcccgctcagaacatacatttaccatttgggcaatttgtatataagcagtagcaacctgcactattccttctcttttttctttttcttttttttttattttttatttttttatgagacagagtctcgctctgtcaccaggctggagtgcagtggcgagatctcggctcactgcaacttccgcctctcgggttcaagcaattctcctgcctcagcctcccgagtagctggtactacaggcatgtgccaccacacccaactaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatccacccgcctcgacctcccaaagtgctgggattacaggcgtgagccaccacacccggcctactattctttttctttagtgagtttgttaaagctgctataaatataaaacctgtcagaagttgtaactctttctctctgataagtgatgtgttttctgaagccttctgtttctatgggttatacatggaaattctttaaagattttataaagggtaaatattttaaaagattagaactctgtagggttgagacctctgaaattgagtagagagagagaagggtttgttgagggatttttttgttttgttttttgatagtttacttgctgcctctcataccttaatgtgattttcatatattttttatatatacatgtatgtgtgtgtatataaacacatatgtatgtgtttggaagtatagcttccttttcttttatatttattagaatagtgctttaataattatagaattgtattggcagcatcttttatagacatataatcatgtttattttaagaactgaccactcgtttttgctatcctttagtgcaataagcagttttaaaggaaagttgtgtctgtttgcatctttaccatggatagtaggaggaacaggcacctccataatttaaaagggcaaataatacagccttaatttcagaaggaaagttttgtaattttcggttttaaagcatatcttttaaaattcatcatgataaaaggctggatgcggtggctcatgcctgtaatcctagcgctttgggaggccgagacaggtgtattacctgagctcaggagtttgagaccagtctggccaacgtggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtagcaggcacctctaatcccagctactcgggaggctgaggcaggattgcttgaacccaggaggtggaagttgcagtgagccaagattgcaccattgcactccagcctgggcaacaaatgcaaaactccgtctcaaaagaaaaaaaaatcataatgaaaatgaagtgaaattgcctaaatgagtccaacttgaatattagaaataaagttgaacttttatataagaaataatcgtgaatagcttaacatatttaaattatttgcaaatagatgtgtttattgaagaatcatattggctagatgcccattttcatttactaaaatgaatcaggaaaatgcaagatgatattttaaaacttttgctaatgtatcaccagtgtaactttccttttaaaattaaggtgatagtaacaaaggaagttaggactttgatcattttaaatcagttaaatcactgaaatgtgggaaattgttttacaaaacttttattgattacactttaaggtgttaaaaagtactataaagctatcaaaaccgagtttatcagtaacattggattcaggggagctttgcactttgtaactcatgaaaattgcattttgattttttttttttttgcactggttcagagtatagatactacagattgtttccagtgggcattgttgttagcctttcagaattccatctgcacatgaaacctaatggatttaagatctttagtttctctcttacctgtaatccactattattgccaattcactgtattttgagcctaaaatctgagcccatgtcctccgacaggcatgaaatcttttgtccctctgccagaaaactacgaaagtactgtattttgtgtgttcattattttgaagtgtctgaaatgcaatttacaacactgttgcaaagaactttacaaaaggtaatatttgtatcgtatatacattttttctcccagccttctcccatctcctccagaaaaatttcctataaagatggatttttttacactgaaattttactgaatatagtcaggatcatgggcaagagaagaaaatagtatacccaagatgataaaaatttaattcatctatgcttgatcaatgtgagtaaaacatcttcctttatcatgggagctgcacagatttcatgtgggaaacttagggaatgactgtagataccctttctctatgtactctgtcacctaattttcagtcactcatatatgctagactggagcccttaatttaaatctatttggaaggacttttttaagatgaaaaatattttttctaaattataaagctttaccttttgagtgatttctttttaagagtgctcttacactagtcagctagtgtaagagctagtttaaagttgattaacttgaaagaatatgtatactatatttctattttgctaacaaatggtatattaattaccattggttcttaattacaagaaaacttgtgcttagaattttaagataaaaggctaagtgaccaatgcttcttgaaatttgtcctatttattgttgcacttctggtgtagaatttctaatcttttttattttaaaaaagttttgcttttttttaagttaaacatgaaattcacagtggcccttctgctcctgcccttgctcactaactatatcatgaatgctaaattttggtcttcttttttctatgatgcgtcttacaagactgactgtaaaatatcagtctggcaactagataattgattttcatatgaagaagagttgggagtttaatgtatattcttgatggttaatctgtctacataaagtgctgatacatgtattatattacagtatcacgttactggcatggaggaccatacacttccaatactgtagctgctatatttatttaagtagagtctgacagttactgcactaaacaataaggagataagcaggattcaaggctagtgttagaccctttttttcctaagagtaaggacacggaatatcaaagtaacaaagggtgctgccattttagtttcaatttaatatcaggatattctttgttttagaaatgtagattttgacttttacagtttgaaaaagggtacctcagcctcctcagtactggttttttggcacatttcaacagaaatattagattccctttatttttcttaatagtgatcttctaacaagtttcttggaaaaactattattctaagggaaatccctgtttataacctattaatatatttctattcctagaagagagtctggcaggggttctagtaggaattactgagtgtttcggaaggcacttgatagaggcatctctgctttccagcacagggattctcagccttctaaagatctagaccagtttccaagctagcttctccacagcccaccactgcctagtgtttatttgtgtattctctaatggattttaggaggataggccttctgacagacagaatcatgaaagacttaaggcatgtctagggaaataaacgctgacttgcccttcagcaggaatgactggcagcggatctctgtgttcaaggaaagggtgagcgctaagcatgccagtgatggatccaaagtatttagatggattgcagaccaggaattagagaccgtttgtgactcaaggaacttgatggatctgtttagagacctacatgaatttgccaagggcagtgatttttatgaaattcaagaagcaaacgacttggatacagctagaatatgttgcggtcttcctatttcaaacttgattttaatatttttaccaagaagtttaactgacaactctgcaaaattttcattcagtatcattaaacctgagttaaatgtttgcttagcttatccgcttagatgttcttctgttgaacaggcaggttgcccttaacagtaacttgctacttaaattaccttttattagttagtcaagctgcaaaaatatcattagtctggcatctttattttggctttatccatatgaagtattcattattttcattctttctgagaattcataaatgtcttaaagcttcagtaagaattgttgggaggtttgacatcaagtaacgccttcctgtgtagcagtataaccctaatttagaacccttgttttcctatttcagtcctcgtatttgatcatagaaaagcacttttgtgattctataggggtcaaaaaataagccaagaataggtaagtcagtacagaaatcagaaagtgagaattttctccaaaaaagcttttaaaaaagtcctgtttatactaagaacattctcgatcagttgcaatgttagaaatgatactgtgattagtgaacgccaagctgagtcccaggaagcagggagggggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtatatatataatctcacacacacacacaaagggaaaaattattttgacttttttcctacttttaaaatggtacatttaagtttataattttccatggcagtcaacataattttttaaactaagatataatggtcaaggcttgtgctaatattacctactactcattgacatttatattactttacccatcaaaactagtactccagatgtttacatcattgattaaatctcaagaatctttttttcttaaaatatggaagttaaagattttaatttgaattaaagacagaaggatgataaattcaatatagagggttgagatttaccggtgagaaaccctgttgaagtatcaggtaaatggtgtgataaaattagcatcctatcaaatcacctatccagccattggggtccctgccttttttagactaatttctaaggtaaccaaaatctgatgtatctatgttagggtctcagtaaagcaaagatgtttgtcagggcatagactcttgagttaaattttttaatcattttttaaagcaaggcggttcttagaaagtgccttttcagaagatggtgctgtagatttttatttttcaaatagcacgaagctaagaattttaaagataaattattttagaactccaagagtgtgacagtttcataaaaataatgttagttgttgtcctgaatctcctccaagggaaccaagaaaagcttttatgcagtaaagtatctaggtaaatgctcaccaaatttattttgtaaatttgaaaacaaaatatttagtagaattacctcttttaattcccaactgtgttggaggaaatccataatgcacataaaacagcaaacctacttaactaactttttaacaaggttatgggtatagtaccagtgtccaaagggaaatgtaacttgcctggaattataggcaacattttctaattaatcttttttttttttttttttgagacaaagtctcactctgtcacctaggctggagtgcagtggcgcgatctcagcttactgcaaactccgcctcccgggttcaagtgattctcgtgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccggcctaattagtcattattaagaaagactgctcataaaggcagtaccaaatcatcattcagatcagcttaagtgagaaagcaaaatgatgatctctattgttagagaaattttcttttctagacaccaaggaatattttaaatgattttttgttttttctaggatgcaggaactatgaaaaatgatgacaaggcatttaaaagggtatgatcagttaaatagaagtaggatgtgcaaaattgtgcttaaggggaaataagcaaaagaaaggaaaatagcaggacctttcatactaattagaaatgtagttacctaccagagggcaactttgctccataccaggaagcagtaaatagcagtaaatgatcatctaggcacttgtttcctgtgaatttggtgagcattcttccagaaaagaagactaaaagcaaacaacaacagaaaaaaaccacacctcagtaaccttgtatgctgcattatataataatgatagtaaaattatattgtttggagtgtactgtgtctgtttgcaaatatacatgcacattaaacttttttgtttttataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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