2025-04-04 05:11:40, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_029729282 909 bp mRNA linear VRT 01-JUL-2019 DEFINITION PREDICTED: Salmo trutta putative proline-rich protein 21 (LOC115172098), mRNA. ACCESSION XM_029729282 VERSION XM_029729282.1 DBLINK BioProject: PRJNA550988 KEYWORDS RefSeq; includes ab initio. SOURCE Salmo trutta (river trout) ORGANISM Salmo trutta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042989.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Salmo trutta Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..909 /organism="Salmo trutta" /mol_type="mRNA" /db_xref="taxon:8032" /chromosome="33" gene 1..909 /gene="LOC115172098" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:115172098" CDS 1..909 /gene="LOC115172098" /codon_start=1 /product="putative proline-rich protein 21" /protein_id="XP_029585142.1" /db_xref="GeneID:115172098" /translation="
MSEHPFTIQPQPVIMSGHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPFIMSGHPFTIQPQPVIMSGHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQLVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPFIMSGHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSEHPFTIQPQPVIMSGHPFTKQLQPVIMSEHPFTI"
misc_feature <25..>471 /gene="LOC115172098" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:401645" misc_feature <487..>897 /gene="LOC115172098" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:401645" ORIGIN
atgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcaggacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcattatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccgttcatcatgtcaggacatcccttcaccatacagcctcagccggtcatcatgtcaggacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagctggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccgttcatcatgtcaggacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcagaacatcccttcaccatacagcctcagccggtcatcatgtcaggacatcccttcaccaaacagcttcagccggtcattatgtcagaacatcccttcaccatatag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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