LOCUS       XM_029589387            2934 bp    mRNA    linear   VRT 28-JUN-2019
DEFINITION  PREDICTED: Rhinatrema bivittatum testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), transcript variant X3, mRNA.
ACCESSION   XM_029589387
VERSION     XM_029589387.1
DBLINK      BioProject: PRJNA549481
KEYWORDS    RefSeq.
SOURCE      Rhinatrema bivittatum (two-lined caecilian)
  ORGANISM  Rhinatrema bivittatum
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042616.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Rhinatrema bivittatum Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Rhinatrema bivittatum"
                     /mol_type="mRNA"
                     /db_xref="taxon:194408"
                     /chromosome="2"
     gene            1..2934
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:115084471"
     CDS             609..2849
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X3"
                     /protein_id="XP_029445247.1"
                     /db_xref="GeneID:115084471"
                     /translation="

MITGNQIKHSSSFGSESVGGYTEESFEEGQLTESEDHHFDVAAECRFPEKVDVKEEKTNICEIKKRENSKYLGLLSSTLVESSMPLPSLKGHPDENCKLPQPWRNDFKVTDKPSAHLPLNSTAHKEWKMERNSLSYLPVSKTALPTGYCNIYFNTVRGCWRRNCWYLHVPKQGDEKFCMEIIQKLVSTVNINLLQRAVQIFTNYYRRVPPGIHYDPEVQRTLLLSLLNRPLLQDVFLVLNIGAIVKILIFFQPSVEIFVKVFECVATTGLKKAVPNLVDIFCKLVEAGMILQPQHVDYIIKLLNDMQASESEISVILAMKTRLHSQESKKNWLYDLDLAIAEIEHCKERADWIKLGTLYINIRMGCENLTDLKRFSTCVADALTKDSKDERSVVPFCEFAETVGQDPNHNGVDKNLLGRIGISVIFSYHKYKQWMKGKKVLDKLHKMQIDFTTLKGLAGSESLAPRCQVVNVAVEIFLESGSLDGAIWVLKESEWIINTSLWPCDRMDVLNRHNLLCTIASEALKKSLYRQAFEVLQNLPGLQEPQDALDVSQYSALFNQLLDSCIENNSLGMSSSVVDFMILKNIPINFSFFRGLITALGRSCFWLRARSHYKSALSLGIYPPLEGNLYRKILHIPSYMSEIEMLLATEIFMVSNASNIQSPGGSSQTFQIVLKRCEEDKLRSKDDYRAATERLMLAVRISTPKLFIKHMTVNAAMEQVYILDHFAALKWLKENMKWAGKVWLFQ"

     misc_feature    1635..2162
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

gcgctgggtcccattcatgccgttccgctggtttacgtcacttccggcccctattcagcgacttgggctgcgcgtgcgctatagtgggagcacgcgctggatggtgggcggcagggttttgggttggtgcgctgtaggcggcgtgaagcgtgtgatgttcgctacgcaggggtggcggtttttgtaggcccctttttttgtttcgtagcgtgattttgtttttctagttttctcgccttggagctgtgtatatagtctaaaccttcaaattaaattgtgtaattttttttgtgggcagcccgccttccctctccccaaacaaacgaaaatctcgatcaagttagctgggctgtcagtgtgataaactggtagaactgcaaattacgttaaatttttgtagcgtgaaagaaactttgagattttattttagcgtgtggttgtaaactataggcttgttgcttctgggttgtgaactttggttccatataataaatgaagtagtaaagagtaagaattggggacggctcaaattatattttagcctagaccttcctgttaaacaccaacgtggaggggcagcggatcttaatcgaaattatggtggttcgatgatcacaggaaatcagataaagcacagttcctcatttggaagtgaatctgtaggaggatatactgaagagtcttttgaggaaggacaactaacagagtctgaagaccaccattttgacgtggctgcagagtgcaggtttcctgaaaaagttgatgtaaaagaagaaaaaacaaatatttgtgaaattaaaaaaagagagaattctaaatatttggggttgttgagcagtactctggtagaatctagcatgccattgccatctttgaaaggacatcctgatgaaaactgcaagctaccacaaccttggaggaatgatttcaaagttacagataaaccctcagcacacttacccttgaattctactgctcataaagaatggaaaatggaaaggaattcattatcctatttgccagtatcaaagactgcgctccccacaggatactgcaatatttatttcaacactgtacgaggctgctggaggcgaaattgctggtatctccatgttccaaagcaaggagatgaaaagttttgtatggaaataattcagaagttggtcagcacagtcaacataaacttgctacagcgtgcagtacaaatatttacaaactactacagaagggttccacctggcattcactatgatcctgaagtgcagaggaccctgctgctttccttgctcaatcgtcctttgctgcaagacgtatttcttgtgttgaacatcggtgcaattgtcaaaatactgattttttttcagccttctgtagaaatattcgtcaaagtgtttgagtgtgtggcaacaacaggcctaaagaaagcagtgcccaatttagtagatatcttttgcaagcttgttgaagctggcatgattcttcagcctcagcacgtcgactatataattaaactgctgaatgacatgcaggcttcagaatcggaaatcagtgtcattttggccatgaaaaccagacttcattcacaggaatcaaaaaagaactggctctatgatttagatttggcaattgctgaaattgagcattgtaaggaaagagcagattggatcaaactggggactttgtacattaatataagaatgggttgtgaaaacttaacggatctcaagaggttttcaacttgtgttgctgatgcattaacgaaagattccaaggatgagagatcagtggtacctttctgtgaatttgctgaaacagttggccaagatccaaatcataatggagtagacaaaaatttactgggacgaattggaatctctgtaatattttcgtaccacaaatacaagcagtggatgaagggcaagaaagttctggataaactacacaagatgcaaatagacttcactacactgaagggattggctggatcagagagcttggcaccaagatgccaagtggttaatgttgctgtagaaatctttcttgaaagcggcagtctagatggagcaatctgggtactaaaagaatcagaatggataataaacacttccctgtggccttgtgacagaatggatgtccttaatcgacacaatctgctctgcacaattgcaagtgaagcactgaaaaaaagtttatacaggcaggcgtttgaagttctacagaatttaccaggattacaagaacctcaagatgcccttgatgtttctcagtacagtgcacttttcaaccaacttttagattcctgtattgagaacaatagcttaggtatgtcctcgtctgtggtggacttcatgattttaaagaatatccctatcaacttttcattcttcaggggactgataacagcattgggaagaagctgtttttggctcagagcaaggtcacattacaaaagtgctctatcattgggaatctatccaccactggagggaaatttgtaccgtaaaattttacatattccttcttacatgtctgagattgagatgctgctggcaactgaaattttcatggtttcaaatgcaagtaatatacagagtcctggtggttccagtcagacatttcaaattgttctgaaaagatgtgaagaagataaattgcggagtaaagatgattatcgtgcggcaacagagaggctgatgctagctgtccggatatcaacccctaagctcttcattaagcacatgacagtgaatgctgctatggagcaagtctatattttggaccattttgctgctttaaaatggctaaaagagaacatgaagtgggctggaaaagtctggctttttcagtaagtttagttggcagaagaacttttttttcaggacagttaaataatcattgttacataaatgcagaaaaaatcagtaaagagagttt

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