2024-03-29 17:40:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_028886630 3749 bp mRNA linear ROD 06-NOV-2020 DEFINITION PREDICTED: Peromyscus leucopus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_028886630 VERSION XM_028886630.2 DBLINK BioProject: PRJNA533285 KEYWORDS RefSeq. SOURCE Peromyscus leucopus (white-footed mouse) ORGANISM Peromyscus leucopus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051075.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 6, 2020 this sequence version replaced XM_028886630.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Peromyscus leucopus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3749 /organism="Peromyscus leucopus" /mol_type="mRNA" /db_xref="taxon:10041" /chromosome="14" /sex="female" /tissue_type="mixed organs" /dev_stage="adult" /breed="LL Stock" gene 1..3749 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns" /db_xref="GeneID:114705018" CDS 68..3571 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_028742463.1" /db_xref="GeneID:114705018" /translation="
MALFPAFADISEASGGGTSRKELDWLSNPSFCVGNLTSLSQQTEEVTALASEGSPLTRSPLKSELSDESDPSKTLTQISRKKKKEKKKKRKHQHRKKAKRRHEQSSSGGSESDTDSGKDRSSRSLKDSQKESEKPSQGSNAVAVAAAAAGHHSIWLEDIQTLTEVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKHSHKHLERYFTKKSVGLMRTEGIAVCSNPEPPSSETVTFIPVKDSDDVATPVATWLNPLGIYDKSTTQWLQGQGPPEQESKQPDSQQDRESAVLKAKVEEFNRKVRENPRDTQLWMAFVAFQDEVMRGPGLYALEEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTGLWQRYLSFCQSQFGTFSVSKLHGLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHAEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPKWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPALQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEEFVRNVFHIVLPLFSGKHKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGATTGRAVHVLTRLTESSPYGPYTGQVVATQVLKARKAYEHALQDCLGQTCASDPATAESLDCLGSLVRCFMLFQYLTVGIDAAVQIYGQVFAKLKGSVLPEGPGPEDSTGPQSLSSVLEAVTLMHTSLLRFHMNISVYPLAPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFNIVTRSAKHLEPWLFAIEAEKMRKRLVDSVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDLMTEKELRVRLPLEELDLLLED"
misc_feature 563..850 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(563..586,593..598,608..613,617..619,623..667, 674..682,686..694,716..724,734..739,743..748,755..775, 800..811,821..850) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1016..2014 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gtcctccaaccagagcgctccagacggcgccatttctgtggtgggagtggtggtgcggcctgcgaacatggcgctgttcccggcctttgcggacataagtgaggcctccggtggtgggacatccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaatctaacgtctctgagtcaacaaaccgaagaggtcacagcccttgcttctgaagggtcaccactgacaaggagtcctctgaagtcagagctctcagatgagagtgaccctagcaagacactcacacagataagccgaaaaaagaagaaagagaaaaagaaaaaaaggaaacatcagcaccgcaagaaagctaagaggagacatgagcaatcgagcagcggtgggtctgagtcggacacagattctgggaaggacagatcttccagaagcctcaaggacagtcagaaggagtctgagaaacccagtcaaggaagtaatgctgttgctgttgctgctgctgctgctggacaccactccatttggctggaagacattcagactctgacagaagtcttcaggacagataagaaaccagatcctgccaactgggagtataaatctctctaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgcatatcttgggaaggggcttctgcagctaagaagcattcacacaagcacctggagcgttattttaccaagaagagtgtgggattaatgcgcactgaggggattgctgtgtgtagtaaccctgagcccccttcctctgagacagtcacatttatccccgtgaaggactccgatgatgtggctacccctgttgcaacatggctgaatcctctggggatttatgataagtcaactacacagtggttacaaggacagggtccaccagagcaagaatcaaagcagccagactcacagcaggacagggagagtgctgttctcaaggccaaagtggaggagtttaacagaaaggtgcgggagaatcctcgggatactcagctgtggatggcatttgtagctttccaggacgaagtcatgaggggccctggcctgtatgcccttgaggaaggagagcaggagaagcaccggaagtccctgaagctcctgctggagaagaagctggccgtgctggagcgggccatcgagagcaacccaagcagcgtggacctgaagcttgccaagctgcagctgtgcgccgagttctgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacgggcctgtggcagcgctacctctccttctgccagagtcagttcggcaccttttctgtgtccaaactccacggtctgtacggcaagtgcctgagtaccttgtctgctgtcaaggacggtagcatcttatcccaccctgtgctgccaggcacggaggaggccatgtttgccctcttccttcagcagtgccacttcctacggcaggccggccacgcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcccgacagtgtgaaggagctgcccaccaaagtacaggtggagttctttgaacccttctgggacagcggagagccccgtgttggggagaagggagcccgaggctggcgggcatggatgcatcagcaggagcgtggcggctgggtgcttgtcaacccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactcttcccaagtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgcccagataagaccaagaagcaaacggaggaagactgtgaggaccctgagagacaggtgctgtttgatgatattggacaatctctgatcagactttccagcccggctcttcagttccagctcatcgaggcctttctgcagttcttgggcgtgccttccggcttcctgcctccagcctcctgtctttacctggccatggacgagagcagcatctttgacagtgaactttatgatgagaagcccttgacttacttcaacccttcgttttcgggcattagctgtgttggctacatggagcagctgggctgtcctcgctggaccaaaggccacagccgagagggcgaggagtttgtccgcaacgtcttccacattgtgctgcctttgttctcaggcaagcacaagtctcagctctgcctgtcctggttgcggtatgaggttgccaaggtgatttggtgtctacacactaaaaagaagcgactaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacacctagagtggttgcttggcaacatagaggatgccagaaaggtgtttgatacagcactcagcatggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcgagaggagccaccacaggccgggctgtccatgtgttaacgcgactgaccgagagcagtccctatgggccctacactgggcaggtcgtggccactcaggttctgaaagctcgaaaggcttacgagcacgccctgcaggactgtctgggacagacttgtgcctctgacccagctaccgcagagtccttggactgcctgggtagcttggtcagatgctttatgcttttccagtatttgactgtagggatcgacgctgctgtgcagatatatggacaggtgtttgccaagctgaagggctctgttctcccagaaggtcctgggccggaggatagcaccggccctcagagtttgagcagtgttctcgaagctgttaccctgatgcatacaagtctgctgcgattccacatgaacattagtgtgtaccccctggctccactccgagagacgctctcagaggctctcaagctatatccaggcaatcaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttcaacatcgtcaccaggtctgccaaacacttggagccttggctctttgcaattgaagccgagaagatgaggaagaggctggtggactctgtccagagagtaggtggtagagaggtccacgccaccatcccggagaccggcctgacgcatcggatcagggccctgtttgaaaatgcaattcggagcgacaagggcagccagtgccccctactgtggaggatgtatttgaattttttggtttccttagggaacaaggagagaagcaaaggtgtgttctacaaggcactccagagctgtccttgggcaaaggtgctgtacatggatgccatggagtacttcccagacgagctgcaggagatcctggacttgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggacctactgctggaggactagtgtacacccggggcagtgctggtctgctgaacctcgaggacagggcccaggagagccacggctgtgccagggctttcttaaccgtccgggtggggtttggactgttttacatattatatatgtgaccaatgatgtacagatggagtcgtgccagtgataaaccttttgtggttgtgtg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]