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2024-03-29 17:40:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_028886630            3749 bp    mRNA    linear   ROD 06-NOV-2020
DEFINITION  PREDICTED: Peromyscus leucopus NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_028886630
VERSION     XM_028886630.2
DBLINK      BioProject: PRJNA533285
KEYWORDS    RefSeq.
SOURCE      Peromyscus leucopus (white-footed mouse)
  ORGANISM  Peromyscus leucopus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Neotominae; Peromyscus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051075.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 6, 2020 this sequence version replaced XM_028886630.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Peromyscus leucopus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3749
                     /organism="Peromyscus leucopus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10041"
                     /chromosome="14"
                     /sex="female"
                     /tissue_type="mixed organs"
                     /dev_stage="adult"
                     /breed="LL Stock"
     gene            1..3749
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:114705018"
     CDS             68..3571
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_028742463.1"
                     /db_xref="GeneID:114705018"
                     /translation="
MALFPAFADISEASGGGTSRKELDWLSNPSFCVGNLTSLSQQTEEVTALASEGSPLTRSPLKSELSDESDPSKTLTQISRKKKKEKKKKRKHQHRKKAKRRHEQSSSGGSESDTDSGKDRSSRSLKDSQKESEKPSQGSNAVAVAAAAAGHHSIWLEDIQTLTEVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKHSHKHLERYFTKKSVGLMRTEGIAVCSNPEPPSSETVTFIPVKDSDDVATPVATWLNPLGIYDKSTTQWLQGQGPPEQESKQPDSQQDRESAVLKAKVEEFNRKVRENPRDTQLWMAFVAFQDEVMRGPGLYALEEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTGLWQRYLSFCQSQFGTFSVSKLHGLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHAEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPKWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPALQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEEFVRNVFHIVLPLFSGKHKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGATTGRAVHVLTRLTESSPYGPYTGQVVATQVLKARKAYEHALQDCLGQTCASDPATAESLDCLGSLVRCFMLFQYLTVGIDAAVQIYGQVFAKLKGSVLPEGPGPEDSTGPQSLSSVLEAVTLMHTSLLRFHMNISVYPLAPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFNIVTRSAKHLEPWLFAIEAEKMRKRLVDSVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDLMTEKELRVRLPLEELDLLLED"
     misc_feature    563..850
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(563..586,593..598,608..613,617..619,623..667,
                     674..682,686..694,716..724,734..739,743..748,755..775,
                     800..811,821..850)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1016..2014
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gtcctccaaccagagcgctccagacggcgccatttctgtggtgggagtggtggtgcggcctgcgaacatggcgctgttcccggcctttgcggacataagtgaggcctccggtggtgggacatccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaatctaacgtctctgagtcaacaaaccgaagaggtcacagcccttgcttctgaagggtcaccactgacaaggagtcctctgaagtcagagctctcagatgagagtgaccctagcaagacactcacacagataagccgaaaaaagaagaaagagaaaaagaaaaaaaggaaacatcagcaccgcaagaaagctaagaggagacatgagcaatcgagcagcggtgggtctgagtcggacacagattctgggaaggacagatcttccagaagcctcaaggacagtcagaaggagtctgagaaacccagtcaaggaagtaatgctgttgctgttgctgctgctgctgctggacaccactccatttggctggaagacattcagactctgacagaagtcttcaggacagataagaaaccagatcctgccaactgggagtataaatctctctaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgcatatcttgggaaggggcttctgcagctaagaagcattcacacaagcacctggagcgttattttaccaagaagagtgtgggattaatgcgcactgaggggattgctgtgtgtagtaaccctgagcccccttcctctgagacagtcacatttatccccgtgaaggactccgatgatgtggctacccctgttgcaacatggctgaatcctctggggatttatgataagtcaactacacagtggttacaaggacagggtccaccagagcaagaatcaaagcagccagactcacagcaggacagggagagtgctgttctcaaggccaaagtggaggagtttaacagaaaggtgcgggagaatcctcgggatactcagctgtggatggcatttgtagctttccaggacgaagtcatgaggggccctggcctgtatgcccttgaggaaggagagcaggagaagcaccggaagtccctgaagctcctgctggagaagaagctggccgtgctggagcgggccatcgagagcaacccaagcagcgtggacctgaagcttgccaagctgcagctgtgcgccgagttctgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacgggcctgtggcagcgctacctctccttctgccagagtcagttcggcaccttttctgtgtccaaactccacggtctgtacggcaagtgcctgagtaccttgtctgctgtcaaggacggtagcatcttatcccaccctgtgctgccaggcacggaggaggccatgtttgccctcttccttcagcagtgccacttcctacggcaggccggccacgcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcccgacagtgtgaaggagctgcccaccaaagtacaggtggagttctttgaacccttctgggacagcggagagccccgtgttggggagaagggagcccgaggctggcgggcatggatgcatcagcaggagcgtggcggctgggtgcttgtcaacccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactcttcccaagtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgcccagataagaccaagaagcaaacggaggaagactgtgaggaccctgagagacaggtgctgtttgatgatattggacaatctctgatcagactttccagcccggctcttcagttccagctcatcgaggcctttctgcagttcttgggcgtgccttccggcttcctgcctccagcctcctgtctttacctggccatggacgagagcagcatctttgacagtgaactttatgatgagaagcccttgacttacttcaacccttcgttttcgggcattagctgtgttggctacatggagcagctgggctgtcctcgctggaccaaaggccacagccgagagggcgaggagtttgtccgcaacgtcttccacattgtgctgcctttgttctcaggcaagcacaagtctcagctctgcctgtcctggttgcggtatgaggttgccaaggtgatttggtgtctacacactaaaaagaagcgactaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacacctagagtggttgcttggcaacatagaggatgccagaaaggtgtttgatacagcactcagcatggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcgagaggagccaccacaggccgggctgtccatgtgttaacgcgactgaccgagagcagtccctatgggccctacactgggcaggtcgtggccactcaggttctgaaagctcgaaaggcttacgagcacgccctgcaggactgtctgggacagacttgtgcctctgacccagctaccgcagagtccttggactgcctgggtagcttggtcagatgctttatgcttttccagtatttgactgtagggatcgacgctgctgtgcagatatatggacaggtgtttgccaagctgaagggctctgttctcccagaaggtcctgggccggaggatagcaccggccctcagagtttgagcagtgttctcgaagctgttaccctgatgcatacaagtctgctgcgattccacatgaacattagtgtgtaccccctggctccactccgagagacgctctcagaggctctcaagctatatccaggcaatcaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttcaacatcgtcaccaggtctgccaaacacttggagccttggctctttgcaattgaagccgagaagatgaggaagaggctggtggactctgtccagagagtaggtggtagagaggtccacgccaccatcccggagaccggcctgacgcatcggatcagggccctgtttgaaaatgcaattcggagcgacaagggcagccagtgccccctactgtggaggatgtatttgaattttttggtttccttagggaacaaggagagaagcaaaggtgtgttctacaaggcactccagagctgtccttgggcaaaggtgctgtacatggatgccatggagtacttcccagacgagctgcaggagatcctggacttgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggacctactgctggaggactagtgtacacccggggcagtgctggtctgctgaacctcgaggacagggcccaggagagccacggctgtgccagggctttcttaaccgtccgggtggggtttggactgttttacatattatatatgtgaccaatgatgtacagatggagtcgtgccagtgataaaccttttgtggttgtgtg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]