LOCUS       XM_028396467            3825 bp    mRNA    linear   VRT 15-JUL-2025
DEFINITION  PREDICTED: Parambassis ranga NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_028396467
VERSION     XM_028396467.1
DBLINK      BioProject: PRJNA526690
KEYWORDS    RefSeq.
SOURCE      Parambassis ranga (Indian glassy fish)
  ORGANISM  Parambassis ranga
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Ambassidae; Parambassis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_041042.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_900634625.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/15/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Parambassis ranga"
                     /mol_type="mRNA"
                     /db_xref="taxon:210632"
                     /chromosome="22"
     gene            1..3825
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:114428121"
     CDS             19..3603
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_028252268.1"
                     /db_xref="GeneID:114428121"
                     /translation="

MALFPAFAEVASNKTEDSSKDLDWLTNKSFQSGGALSLHGQFLERTSENKRETSAGRELSSGEETGDKEECNMLPRKKKKKKSEKKKKKKKKHKKKSGKYSNSSGSDSETIYPSDLKREKEAEGKQAAPIATHFSWLDDIQSPTAHSFCVDHKSDPNNWTYKSLYRGHVASYKRRGTSSLGLDTRRQGISWEDSETKKKQKASDSKKGADRYFSVVNRRLLRSEPPLPVLSKYPDAITTSSFLHLNDGEEENKGRKTDDQTQTSAANPLGVYDSSTTLWLQGKGQQEQQKPDTHTEDSVTPLAGRTEEFNRRLREHPTDTQLWIQFIQYQDELSAAVFGGEEEQQGGEMAERHKSSYKAVLEKKLSIAERAIATNPVCIALQLERLKICQELWEPSALAKEWKKLVFLHPNSAPLWKEYLLFTQSYFSNFTVSKVNAAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQSGHTEKAISLFQAMIDFTFFKPDSVRKLSTKQQIEFFEPFWDSGEARVGELEARGWKAWMVQQERGGWLQPSAEEEEEEEEEEEEEVKDKSQPRWTVWLDLEASREAAQWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELQLSFILHFLSFLGLPVNSVLTVAPCEPGWFLESLSLLTQGKEHRPLLTSYDPPESGVNSVGHMTTLQGTRKWVGLGKPGEKFVTNVFSTVLPVLPPHHQTFLSLSWIQYEKVKVLRCLHSGNKKQLRTQGKSSKRIAKRLLKEPDNRSSLVLWREYAHLEWMLGNLDEARKIFSTAITMGGTKGLSSPTLCELCLLWSQLEVESGAKEQGGQLPDVTASQAVCILTRLVEGTSSASSISPVTILKARKSYEQALTASLSALDQNVHNLQTNRKGHEDLKGEKLKLRGLVGCFALFQYLTVSIQAASTVYSQARERMENLHHSLTPETQPDRDEETTTGASQSSHTNMHYVNRLASECEAIAVQQAALLRYHSSISVLPLVTLRQNLTSALSACPNSSPLWSMYVQVENRYYSAGKARRFFHSVTRNSSSVIPRLFAIVAEQQRKQVVDATQRSCCHNDALPILPENGLSNRIRGLFESTIATEMGAHCPLLWRMYIHFLVSDGKMDKARGIFYRALQSVPWAKGLYMDAAQLFPEHLQEFVDLMTEKEIRLRLPLEELDILLED"

     misc_feature    457..759
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(457..483,490..495,505..510,514..516,520..564,
                     571..579,583..591,610..615,631..633,643..648,652..657,
                     664..684,706..717,733..759)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    940..1947
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

tatgtgcaacatagcatcatggcgctgtttccagcttttgcagaagtagcgagtaacaaaactgaagattcctccaaagatttagattggctgaccaataagagttttcagagtgggggtgcactttctcttcatggtcagtttttagagaggaccagcgaaaacaagagagagacgagtgctggtagagagttgagctctggagaggagactggagataaggaagagtgtaatatgctaccaagaaagaagaaaaagaagaagagcgaaaagaagaaaaaaaagaagaaaaagcataaaaagaagagtgggaaatattcaaacagcagtggatcagactctgaaaccatctaccccagtgatctcaaaagagaaaaggaggcagaaggaaaacaggctgctccaatagcaactcatttctcctggttagatgacatccagtcacccactgcgcattcattctgtgtagaccacaaatcagacccaaacaactggacttacaagtcactgtacagaggacatgtagcaagttataaaaggagaggcacctcatctttgggtctggacactcgcagacagggtatcagctgggaagattcagagacgaagaagaaacagaaagccagtgacagcaagaaaggagcagacagatatttttctgtggtcaatcggcggctgctgaggtctgagcctcctcttcctgtgttatccaaataccctgatgccatcaccacctcctccttcctccacctgaatgatggtgaagaggagaacaaaggaagaaagacagatgaccagacacagacatcagcagctaatccccttggagtgtatgactcctccacaaccctctggctacaaggtaaaggacagcaagagcagcaaaagccagacacacatacagaggacagtgttacacccttggccgggaggactgaagagttcaacagacggctcagagaacatccaacagacacacaactctggattcaattcatacaataccaggatgagctgagtgcagcagtgtttggaggtgaggaggagcagcaaggtggtgaaatggctgagcgtcataaatcttcctacaaagcagtcctggagaaaaagctaagcatcgcagagcgtgccatagccaccaaccctgtctgcattgctctgcagctggagaggctcaagatctgccaagagctctgggagccctcagcactggctaaagaatggaagaaactggtattcctccatccaaacagtgcccccttgtggaaggaatatctgctttttacccagagttactttagcaactttaccgtgtcaaaggtcaatgctgcctatggcaagtgtttaagtacgctcagtgctgtgcgggacggcagcatggtctctcacccagctctgcctggaatcgaggaggacatgttggatatcttcacgcagcagtgtcatttcctgcgtcagtctggtcacacagagaaggccatttctctgtttcaggccatgattgacttcactttctttaaacctgacagtgtacgaaaactgtcaacgaagcagcagattgagttctttgagccattttgggacagtggggaagccagagttggggagctggaggccagaggttggaaagcctggatggtacaacaagagcgaggagggtggctacagcccagtgcagaggaagaggaagaggaggaggaggaggaggaagaggaagtgaaagataagagccagcctcgatggacagtctggctggatttggaagcatctcgtgaagcagctcagtggttgccctggagacctgacaaagccaaaggccagtcagaagaggactgtgaggaccctgacagacaggtgttgtttgatgacatcggcccatccctgatttgtctgtcttcaccagagcttcagcttagttttattttgcattttctgtcatttctggggctgcctgtaaactctgtgcttactgtcgccccctgtgagcctggttggtttctggagagtctttcactactaacccaaggtaaagagcacaggcctcttctgacctcctatgacccacccgagtctggagttaactctgtggggcacatgaccactctccagggaacaaggaagtgggtggggcttggaaagccgggtgagaagtttgttaccaatgtgttcagtacggtactgcctgtcctccctcctcaccaccaaacctttttatctctgagctggattcaatatgaaaaagtcaaggtgttgcgctgcctgcatagcggcaataaaaaacaacttcgcactcagggaaaaagcagtaagcggatcgccaagcgtctgctcaaagaaccagacaaccgttcatcactggtgctgtggcgggagtatgctcatctggagtggatgcttggcaacctggacgaggcccgcaaaatcttctccacagccataacgatgggaggaaccaaagggctgagcagccccactctgtgtgagctgtgcctcctgtggtcccagctggaagtggagagtggagccaaagagcaaggaggccaactacctgatgtaactgcatcccaggctgtgtgcatactgaccaggctggtagaaggaacctcctcagcctcctccatttccccagttaccatccttaaagcaaggaaatcctacgaacaggctctgacagccagcttgtcagcactggaccaaaatgttcacaatctacagaccaacagaaaaggccatgaagacctgaaaggagagaagctgaagttgagaggtctggttggctgtttcgctctgttccagtacctcactgtgagcattcaggcagcaagcactgtctatagccaggccagagagaggatggagaacctgcaccactcactaacacctgaaacacagccagacagggatgaagaaaccacaactggagcaagccagtctagccataccaacatgcactatgtcaacaggctagcctctgagtgtgaggcaatagcagtgcagcaagcagcgctgctaaggtatcacagcagcatcagtgtgcttccattagtaacactgagacaaaacctgacctctgccctctcagcgtgcccaaacagctctcctctctggagcatgtatgtacaggtggagaaccgttactatagtgctggcaaggcccgtcgtttttttcactctgtaaccaggaacagcagcagtgtgataccacgcctctttgccattgttgctgaacaacaaaggaagcaggtggtggatgccactcagagatcttgttgccataatgatgcgttgcccatcctgccggagaatggcctgagcaaccgtatccggggactgtttgaaagcaccatagcaacagagatgggggctcactgtcctttactttggagaatgtatattcacttcttggtgtcagatggaaaaatggataaggccagagggatcttctatagggcattacagagtgtgccctgggcaaagggcttgtatatggatgcagcgcagctctttccagagcatctgcaagagtttgttgatttgatgacagagaaggaaatccgactgagactgccattagaagagctggatatactattggaagactgaacacacattcattcaagaagcggagttcacttcaatggctcctcaccagcccacatgttgaactactactacatggatggcaggactaagatgcacatagttgaactgagaagttgcagtccttagcatacaatccaccaaatgttgtaattaccacagcaaactattagaattgtattttaataaataatgttgtgaataaaaatgaggttcatttatgaa

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