LOCUS       XM_027653674           11186 bp    mRNA    linear   VRT 11-JAN-2019
DEFINITION  PREDICTED: Corapipo altera lymphocyte activating 3 (LAG3),
            transcript variant X1, mRNA.
ACCESSION   XM_027653674
VERSION     XM_027653674.1
DBLINK      BioProject: PRJNA512899
KEYWORDS    RefSeq.
SOURCE      Corapipo altera (White-ruffed manakin)
  ORGANISM  Corapipo altera
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Corapipo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020884910.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Corapipo altera Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11186
                     /organism="Corapipo altera"
                     /mol_type="mRNA"
                     /isolate="COAL_440"
                     /db_xref="taxon:415028"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver and muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Costa Rica: Volcan Tenorio National Park"
                     /lat_lon="10.40 N 85.0 W"
                     /collection_date="2017"
     gene            1..11186
                     /gene="LAG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:113952015"
     CDS             9158..10678
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein"
                     /protein_id="XP_027509475.1"
                     /db_xref="GeneID:113952015"
                     /translation="

MRLMSLVLFLTFVLLTFSAGHILAGLAEGESREQKMWVREGSSAVLPCHLSPRKMRKSLKQLPDKTSVQWKRHGGSVHQESHVVLEVGYSGLQKTALLMKPRVSLQDSALHNGNFSLRIDPVRSEDAGLYEARVEYNSEVHSCHVELGVITVTLSPPNPVEENELLLMSCNSSYRASLVETCWFHNGHLGPTSRTFCSSPGALSILRPAMSDAGSWRCQLRYSDNEIISATYNLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQINMVTAHWSHLAGGHLQDWDIFPNLSNRSFPLHLPAVGLGDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLGSVPTKSKLAVATPQNLESSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGEVEYKLQITSAQVSSPPAIFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIAVPGPWKLMKENQKGKIQQTEC"

     misc_feature    9257..9598
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    9287..9301
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    9356..9370
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9500..9514
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    9542..9559
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9611..9826
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    9653..9667
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    9695..9709
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9740..9772
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    9800..9817
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9890..10156
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    10094..10111
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    10133..10144
                     /gene="LAG3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    10154..10402
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      

tatattggacacccaacagcagaataggctcctgagatcactgcaactttctggagaacctgttttagggttgtcagttgtagaactgccttggggaaacaaacttctgggtttagctggaaggttcacaagtccccagacattcacagcaattgtccccagtatcagtgttgcactgcattgcactttaggacactgcttggacactccacttctcccagagccatttacagatatcagccacatattgagtgtaattctatgtgacagcaatagcattttaaaagttttctgtcctttccacccttagtacagtttttcatccactcagttgtgctcaggcagctacctgtaggaacctgtcatagaagtaattttagttgttccctattctaattacacactcacactttcttctcttcctcctttaataccaaaattatacactggtctgtcttagaaccccatgaagagccgtatttcaggaattgttcaggggacagtgagtatgtagccagggcctgtcattcccagtggcactgagacaggaaggcaaatttggaagagtctcttgggtcagtttcctcatgagagcagctgtgaggtggaatctcaccctcgagcacctggcaaagtttccaggttatcttctgacccttcaatgagcatgccccttcactttgaggatgtctctgttttttatatccaccccaaacatttgtttttcacagaccaggaaatgctgttactcttggcatggttattttttttcccttttgaataactactcttgagccagtatgactgtagcctctttttccattattaaggcttctgaactttactttggctcatgatcggaccatattgcccatatttcctcctctgtagaagctcatctggtcttacagttcaaacagggggcatacagagcccttggggttaccagtctttcagagtgacttttattttgacttaataagcaacacacagaagaaaattatagtaatttaaaaaaaattaaaaaataaaaaaaaaaatagaaactcctctatctccttcaagtttggaaaaaatgagccctctgagcacctgtatctagggaaaaaacaactagtccctaccaaactcaggggaaagtccccacacccacatgccatcaccacctcagttcaattaagtccaggagctttttccttccttttccctgtgggttatgtgcctcagctcaggagttatgctcctccactgttttcctctgctggagttttcttgcagagcaagaccagctggcttttatttttgagtcttaaaaaaggcactcatgaactctaagggaagccctctcgtcaggtctgtgagtaagggaaaaacctagggaaatatgaataggtagtgttttattctcatgatggtgatcatctagcttggctccctcattcctgcagagagtctcatatcctagggctgagcaagaggatgccactgaccatttttcacgccaacagtctgcaggtggtgaagaggacactacaagagttcttcccatgtcaaggccttgctgtgaaaaacatgtacctaattttcagccagatttttggttttaattttgagcctctggtcctccttatgttcctctgctggagtagagaatctatctctatttcacatcttcttctcatgggaagaaaacatcaaagatgggttgtaagagcataaaaatggtcgtaccaatggtctctctatggtgctctgctatggccaatacaagatccctaaggaaagacattgagaatcaaggcatcatgtagaagcttcctgcaagcaagagtcaaggacatcctgagctgacagtcataccagttcatcacattcaaaagccagtgaggaactgatcctccacaaattacctaatctctatttgaactcatttatactcctgctctccataacatcctaacatcctctaacaataattacactgtctttgtgacatgcaaaatgaatttcctcttgtttgcagtaaaattgctgcctgacctcaccactgtttccttcaaattaggtaaaagagatcaagcatcccaagtttattcatttcaaagcaagatcctcaggctcccaagtcagagatggtttggttttatttttgtaccactctgctaaatccttttcccacatccattttcaaaatatggacacgttccagtaacttgtgctgtaaacagaggtaacgcaatctgttcactccgtgagatctcatttaatacagcatgtatcatctatctccctccctggagccttgtcttcccaggatactgtgttatgttgcggaagtgtgattccacatactttgttcctccatgtagaaccttatgttttaattctaagcgtgattttaccaggggttttaggaggtagttacttcccattaatttggccaaatatatgcaccgtgccaggagaggcagtcacacctgcagagctgtgtagccctcctaaccatattttgtcattgtaagacatccatgaacatcagaaagcatttagatgttgagcagatcatgtgacagcctagcactggaagctcacatagtctgaatttctaggacactttcatctcatcagcaaagcgtctgaagtatttacacagaacacaaaagcattagctgctttatcttctactctcacacatgctgtgcagctaaagagagtcctttggtcttttgtggctttctgagaaaaacctggcagagaagcctgtaagagtggagagagctctgcgcagcatggaatgttcacctcctgtagaatgggacctgacacctgcaaacagaaacttcttagcaccagggaaaattatcaatggcaccaaacaaacaaacaaaaaaaaatcaagcttaaacccatgttttctgcatgtggcctcaattgcaccacagtgaccagctcctggcagaacctcctaatatttagttggctctccgtcttgagaaaccagacctctcccagccctccttgtgacacaggaggtcccaccccttcttgggaattttgaagtccatttatagttccatctctttggtcccagctcctttgagggtaaggaagatttagatcttacaccaagaaagcatgctgttatgtgccagcatagtgagaatgggggtagctccagagccagaggggtctctttgcagtgctaaaggcaagaacacagcaagcagtgattatccataattggaagtgttcaagattttcctgagcctggccctgagcaacccagtctagtttgagagtcactctgctgggagcagaggggtgaaatagagaccccagaagtcctttcccacctgaatcttcctgtgatactgcgactaacaaacaagtgggtttatttgattttgtggtgtttttcttagtgaggcagtagaagatacaaaaggatgtaggctgctacctgccatgaggtgccaagtggagaggaaattgaaaaaacagctcagttgccactacattctgaattgcagtctggcacacaattgtgttaatccagcacaaatgcatagtgttgcagagaggggcaatcccatcttccctttcatctctcctgctgcctctcttttgtcaacactgatgagcagcagagaattgatccagctgaaaactaaactataaaggaataaatccattttgatttacaatgagccctttcagtttaaaaatgcaccatctccctccctagcaattttttgttcaaagtaaagtggttggggatcaccaaatcagagactttattctcttcaggactattctggagcactgctgtgcccctccttgctgtgccatcatccacagcaactttcccagcgattgtactcttctgcaaatgatttttcatagcatcactgctcctttagttaccctctactttttcatatctagctttcccaccaagaaagaaacaacatattctctatttagcctgtagcttccagagctccaatgtaccatgagatatgggctcctgttctcctgccatgatgcaccatgaaaacacagcatgtggatcagacccactttttcacagttcctggggacccaggcaaatacacctagagccagacccctctgtgctctgagcaatgctcatcctccagcacctgaaacatgacaaagtgcctcttctctgttggagaaacacaggttgctgcccagagtagaacacagagaagatttgagccccatgagcagaaggcacatccttctgtggcagtttttctctgaagggatactgtactgtcagttgagagcaacagcagcaataaggatatgagcctggaatatgtggattggcctttctctcttttatggcactttcagagattttatttgcttgatatttctgccaatgctcacctgctttctgggctatctttggtgtccagcacttgtatgtcatccagctctgctgtgggcactggagcttccagtccactgggtcccaaggaccctgcagatggtcagactctttctctccaggtaccccgggagaaacacattttgggagtcccactcttagaccaaggttcagctcccatcaaagtactcctcagctcatacctgagttaaggcaatctttcgggaccactcaactgctgccccagcctctcagcaacacattaggtcagtgcttgactccttcacctcagtgtcagtgtcactgtaactgagagcaaagctggcacatgtctcccatccctctttgctcttgagaaaactcagtgcagccctgggttgtttgggaggctattgcgtattttttgattggaatagaagcatggacactgcaatgaaaagggagttgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacggaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattccgtaagtgtcccatctctccttgaggacgaatctggaggtcttttgaaagagaatagttacacagtcctccccggcaaatgctggccagttataagatgccagatgccaaatatgcccaagaatgctgcagattttcttcagtgattaaatcattggagtttttgttatgttttttggggggggaggttagcagaaatgcagcccacaactttagtcagatccctccaatgttgtttttgactttctaattcaggtttctctgggatacgcaactgagtattgtcacacaaaaggtactcaccttctagcactgtaaagaaagagactgcagatttgtccaaagaccccataaagctacgttttctttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgccataccagagatctgtggtgattcaggcactgcccccctaaaaaggaccctttcaaaaaagcctcccaatcaggtagccaatcactctgcctcctcctagcacttctgcagtggcccattttggttttgcccagacctactgggagatggaaactttctcttttccagtgctcttctcctcactgctttttgggacctgtcatctcagatgaatgggtcccttctccaagaccaccctctgatgtgttgatgtgtggtgtacccagcccctggggagataacatgccacttccaggcatcatgaagcatgtttggtacccaccctggacttaatttcatatatagaatgcacctctgtttggcaccttggtaaaaactatcatggccctttgtgtgggaaaagtggcttgcattcctctacctcagggatgcctattttgatgcattaccacattgtgcatctcacagaaagcctaccaagctgtggacaccagctctttctgcctcagggttctgctgcttgacctctctgcagcaacaaggtgttgacttgggaaccactgcatctgtcccaaatgcccagagaagggcagctccactacttcctctctgcagctgagcttagatttcttttagttccctaagcttcccagtcagtgccagaagtctcgcagttaatcccagtctgatccctgaaaaccttgttgcctgtgcaggtgcctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccagaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattagtaaggaacttggttttgcctgctatgtttgctttagcactggacaaacagcaatcaggatgttttacatgaggtccttctggcaagcactctatctcgggaacgcccagacaagctgataaccccgtcttcaagtcatggcatggtttcctggatcagctgaagtctgaaaataaattctagagcacctgagaaagtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcactcagagaaaaacatggtattacagaaatctggaaacgcagtggaaaattccttcagcaagactaactgaatgataatgcagaaccgtgttttctattcctatttttcttggtgagtgtagtttacatccgtaagacatgccaagagagacaagaagaacaatgtattaaggctgtgcacaagacgactgctgcagtgaagtctgaaacctggctgaagctactaatgcctaaccatggacaaaggagcatttagtgagctgggcttctatgtccctgcccttggctactcctgttgcagcctgcccctcattccccatggctctgccagggtctcacacatccctgtcagcctctctgcccagggtacccacgtgggcagttctaagatgtccctgtgctgatctctctctggtcactgttatctctgcctcggggtcccattctgggagatgacgaaaatgccattcgagggagtcagcatttaaaatgggtcgttagagagaaacgtcacagcgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaatcttccttttacaacatactcactcagcataataacccctcggccccaaacacccctccccagtgccagtgccaggcagctcctgtcattttcctaagctctccatcagtctcttgtgaccgcctcttgggaagctgtagtaggatgggactacgtcctctgctttgctgagtcttacaagagataagcatttcctagagcatggattcctttaaaagtggttttgagggctagagtggaatagtgccagggtgccaaggctacaagagcagagagagttgagatggagggagagagcaatgagctcagtgtgcccctcaagtgaagccaggagaggggaagaagatgatgctggactgcagcaatgtatgtgtctccccaccacggttccaactcccttctctctctctcaccttcacccacacactcacaccattcttgcactgctgatttaagggaaagaagaggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgaaaactgtcacaagttctcccctatctttgctcctctctttctctctcatgtgatcccatggactgttttacacaagagggcatgtgggaccactacaaagcagtcccttggggacatggaggcacatgaggttgcacctgcacaccaatcccactcctcaggaggctggagagccatgtgtgatgaaagagatgagagctgtcactgcaacaggggtctgctgaagcgaggcatagcactggccctcttttatcctccaccttcaccacccagctgaggaaaaccagaaagcaaacaaatatccttccacagttgaaaagtggccactgtgagtcacctcccttcccccagcctgaggaaaagccctaacacttgggggatgagccaccgaggggcttgggtgtctgacacgtcacgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtggggcttctctgagacaaaatgggtcccaggatgaggcacatggatggaaatgtattgccctatgtaaaggtcagcagcttaatggcagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgctggaggaggagggtcccttcctcacactcctcgtcatgccacagtattcagcccctcttttcagttctgattccttcttctggatgctcctctctatctccttggaccacccgggctttgtcccatattggccctggactctagattgatgagtcgcatgtgccctacttggagctcaccacagaccattttctcatgctgcctgtgaactgaccaatgagaaaaagccaagaaattagctcatttggagtattaaagaaggaaagaaaaagaaaatgaaggaaaaaaaaaaaccaagaagaaagaacagcagaaataaagaccaacatgttctcgaaagccctgaaacaattagagggaagctgtaagagacggaaagatcaaaccaaaaaaggtaagagatgaaagaaaaacatgaagggtacttgctgggaagtgtcttctacactttttccactggctatgtagaagcgaaatttgtaagaaaaacaacagcgactcaaagaatttccactaaaagatgcttacagctgtgtctctggtccctccctcctctgctctcacgtgcctcaggcttatactggtttcttggtggtgacgcatcttcttagtgatatgaggaaatttgctgcccacctgcaatataagggcatttagggaaatgctttgatcagagagagagagagacggcatgagagcaagcacatcccactgacccctctttgcttacccaccaacctctagcaccttctttgcccatgcctcatttttactgatctcttcaagctttggaccttgtcaagcacgaacccaagcaggaggcagcccctcgcctttcctggatgccaccatgaggctgatgtccctggtgctgttcctcacctttgtcctgctgactttcagtgctggtcacatcctagcaggattagcggagggtgaaagcagggagcagaaaatgtgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaatgagaaagagcttgaagcagctgcccgacaagacatctgtgcagtggaagaggcatgggggaagtgtccaccaggagtcacatgtggtactggaggtggggtactcgggcctccagaagacggcactgctcatgaagccccgggtgtcactccaggactctgccttacacaatggcaatttctccctgcggattgaccccgtcaggagcgaggacgctgggctgtatgaggcacgggtggaatacaactcagaggtccatagctgccatgtggagctgggggtaattacagtaaccctcagtccacccaatcctgtggaagaaaatgagctgctcttgatgagctgcaactccagctaccgggccagccttgtggagacatgttggttccataacgggcacctgggccccacctccaggaccttctgctcttcgcctggggctctctccatcctgcggccagccatgagtgatgcgggttcctggcgctgccagcttcgatactctgataacgagataatttctgccacgtacaacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagataaacatggtgacagcccactggagccaccttgcaggaggacacttgcaagactgggacatcttcccgaatctgagtaacagaagcttccccctgcatctccctgcggtggggctgggtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgactttggcagtggttacagtgactccaagtatccaaggaccagtttctgaggggagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttggctcagtccccactaagagcaagctggctgtggccacccctcaaaacctggaaagcagcagtgcccagatgggacctatcttgaaaatacccaaagtgtcacaaaaggatacgggcacatgggaatgcagtgtgtatggcccagaaggccaactgggagaagtggagtacaagctgcagatcacaagtgcccaggtctccagccctcctgctatcttcagtgggcaggttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattgcagtccctgggccgtggaagttgatgaaggaaaaccagaaagggaagatccaacaaactgagtgctgacaggagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggtgccatgcagacttgtcaggggggtctagggatggcatgaacaatgcagaagtcattgggaggtctgtatttgcagaggggctgggagctgcctaccagggcaaggcaagcctcactgctgcagtaaggtggccagcagcacagatgatttggagctattgggagtatttgagccagtagctattgcctgctttaatgccaaatctctgcctactctttgcccctcctccgtggctcctctcacaatctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgctcgctttcttctccctctgcccgcactgccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatcta

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