2024-04-18 11:47:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027606011 7901 bp mRNA linear MAM 06-AUG-2020 DEFINITION PREDICTED: Zalophus californianus argonaute RISC component 1 (AGO1), transcript variant X5, mRNA. ACCESSION XM_027606011 VERSION XM_027606011.2 DBLINK BioProject: PRJNA602522 KEYWORDS RefSeq. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045598.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 6, 2020 this sequence version replaced XM_027606011.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zalophus californianus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7901 /organism="Zalophus californianus" /mol_type="mRNA" /isolate="mZalCal1" /db_xref="taxon:9704" /chromosome="4" /sex="male" /tissue_type="blood" /country="USA: California" /lat_lon="37.858768 N 122.484010 W" /collection_date="07-Jul-2018" /collected_by="Frances Gulland and Jochen Wolf" gene 1..7901 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 mRNAs, 8 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:113929236" CDS 170..2050 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X5" /protein_id="XP_027461812.1" /db_xref="GeneID:113929236" /translation="
MCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 170..511 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(305..307,350..352,392..394,404..406,458..460, 479..481,485..487) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 644..1921 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1055..1057,1067..1069,1103..1114,1121..1123, 1145..1147,1154..1156,1166..1168,1178..1180) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1259..1261,1265..1267,1475..1477,1889..1891) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
atcaagtggctagctattgttagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgagtctcagccactgccttctacaaggcacagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacaaactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctataatctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcccccatcctgcagtacggcggccggaaccgggccattgccacacctaatcagggtgtctgggacatgcgggggaaacaattctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaatctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctggtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccattatgagctgttggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtggtgcagaaacgtcatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacataacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaagtctctgatgtccacctcatgacccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgacttgcagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgataatttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgccacccccctttcccttattcctttctctccaccttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatacccctaacccaacaagcctccagccagagcgccagctattttgcattcaaaggaattgacttccatattcattgagcttttaaaaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgatgtcttggagctgctgagaggactggcccctggcctctccacttaacgcctcctcttctccctgtccccccagctccccacctgcctgggtctggagttactttcatagcatttctcattcttggcttcttttttcccctgatggtcaagtcgcttatgtttcaatatttcttaactggggtgtcttataacaaatgatctgaagtctaaaatcagaaaaaggagcaaaagctaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaaggaactatgtaccggacttgttctttggcctggctaggtagagggtggttatctcctcatggtggagctcaggctccatccttcccctgtgcagatactatctttttcttgctataggctccctcctctgcactgccctgcactctttcctgcaagtgcatcttccctttctctggactgtctgacactttggctcatcccagattccagtgtgtcctgtggacaggctgggggattttgctgctccctattgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttttgtctccctagataaagatggggtttggctgtcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcctctcccactgcttgggatgaggagttgcagcttcagtgtggatgttcctctttttgaggagcctgggcttgggtttgccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggccagtctgaatcctggcctgtgtgcttagagctaccatttcccctccccagcagcccttatacagacccagatttgctatgcaaaacagtctatcccaggttttgttctggttggctactttgttcagcgacttcacataacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctctacttctttcctactggctatagcatgggatgccccatgggtacagcccagctgaagaacggaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtagccacctactctcagcaacaagtttatgttctctcctttttctctctttgcctcactgtctccatttgggttttgagctggggcctgaaatgcattttttagctctttggcattgcacatgccattcaagaaataaaaagcaagagaagcggtttgggcaatggcaagaaaatgacttcttgctctgattttttttttttttaaatctttgagacttgaaaaatacccttgaccttgaggattattctttgaaaggtggtgcatgcagattgagaagtggtattagcaacaagctttggctttcttggatttgatttaagtggtgcttcttacttgtgctctgaggaagtgttggggggaccccagcctcatcctcttggtcaggtctcttgctccctttgttctactctcttgcctctgttttctatttatctctttccctggctccttttccttttttctttcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctttgataatcccactgttagctagcaaggtcaggcttagctccttggctgcagaagaccaagacttagttccccaagcctggtgatgttctctctgggctggactgccatcagcgttacacaaggacagagcagcagggctgcctaccttgcatgaaatcaggagggcttctgacaacttccacacctgtccactccttggagttggtttttctcattgctttttctagatctggttccatttctctacctgcctcccttttctcaggctgtcctagggttgagctacttggtttccagggttggagggttaggggatggacttgggggaagaagagaatgatgggaagagaatggagagaatttggataaaagatgggaaagagcactgttcattgatcatttttccagtccagtctgacccactgggggttgaggtgctactgttgaactcgagataagcctggggctattgttgatgggaacttaggtttagaataatgttgacaaggaagatacctagaagcatgaaacctcccttaaaagctcctggttcccacctactagatagctccactgcagcctcctcttctgctaagcaacaatgttcttggatggttgtttttttgttttgttttgttttgttttggggggggtcccagaattcaatagatgaggctagcactcaggatgggcagccaaggggacattttgaattcttagctggcccatggggtatctatctgcaaggctggtgggcagtgttttagacccggcatcatgtttaacaaagaagaatggaagttccttccccttcagggtggaaagttatctcaaactagccaaaatgcagttttggaaactacattgggtgaagttattttttatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaagggattctgtggttttctctttcccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgtttgggagcctaagaatgggagtggagggaatgggctcaaaacaaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctctcttttcccccactcccattaacaaagaaaactgttgggattgattatatctctgatatattttaggttagagtattagattgttataacagcagaactatcacctctataggaaagaaaacaccagagtgttgaaactgcagatttgtgtaaccatacttcacaaggcctccatttattcttcattcaacaaaccatacaaagcactgtgtccagcagtattgttgggggagaaaggaagcacaattcagaaaggaggaaaactgtgtctctctccttaaggagcttaaagtttggtgggggatatgagtggccaaacggttccctagccaaatgatgagggactgaaacaaggctataaagctatagcagtgaagataggaaaggaagatttttgagagacactcagaagatagtactcaatagatgatggaagggagagagaggagtagaggctaataatgctcaggcttctacttgagccataagtatattgggacattcttctaaccaagactgggggagaagggagacgatagaagaaaggtggtgaattttgtgaagatagccttgtatagactgagtgtggaggttcccatgaggcaacaagtttaaggtttccagtaaacacttatattttggtgctcagggaagactacaaaactacagttgtagataatgggattcatactcctatagatggtaggtaaagccgtaggaatgaacaagatggcttagaaaaagagtagagcaagaaaacatagagtccaactccaggaaacacaatttaaaggatgagaggaagctgaacttaagaagactgttaaatcactagtagataccttgtatattttttacttaatgaagtgggagaaaagtcaggagaatggaataggattcaagaagggtgtaattaacaacatgaactgctgccttgaggaggtatttttttctattcagtttaccatcctccaccccatcttctttggcatcttgtaactatatggtcattctccagtatttcttgaaaatgagcattgaaaaaacccaatttaaataaggctaagactaggatttccaagttgttcaccacaaccaccacctccacctccagcttcctcctgtcctcaggagacacttgtaaaagaataaaataaacaaacctaattttgttcctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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