2024-03-29 21:19:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027166108 1942 bp mRNA linear VRT 20-APR-2022 DEFINITION PREDICTED: Tachysurus fulvidraco vimentin like (viml), transcript variant X5, mRNA. ACCESSION XM_027166108 VERSION XM_027166108.2 DBLINK BioProject: PRJNA826113 KEYWORDS RefSeq. SOURCE Tachysurus fulvidraco (yellow catfish) ORGANISM Tachysurus fulvidraco Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_062539) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 20, 2022 this sequence version replaced XM_027166108.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Tachysurus fulvidraco Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1942 /organism="Tachysurus fulvidraco" /mol_type="mRNA" /isolate="hzauxx_2018" /db_xref="taxon:1234273" /chromosome="22" /sex="female" /tissue_type="muscle, blood" /dev_stage="adult" gene 1..1942 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 104 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:113655525" CDS 1..1215 /gene="viml" /codon_start=1 /product="vimentin like isoform X3" /protein_id="XP_027021909.1" /db_xref="GeneID:113655525" /translation="
MSTISSTTISSYRKRYGHESRATTAARGQSDAPAMLYASSKTTGAWSGTVSAADETHDVSLSGALNADFKVSRGSNKSLNDRFVSYVEKVQLLEQRNEALRTELERYRGNGPSRIAELCAHEVADLRRHVDQLTNEKARAEIQRDNLLVDIERIRAKLQEEILQREQAERSTQSFRQDVNIAALARVDLERKVESLQDEIRFLKKLHEEELREIQAQSQQQSDLTSALREIQVQYENLASKNAHVSEEWYDSKFAELSEVANRNKETLRAAKREANEFRYQVQALNREVDALKGTNEALERQMRQTEENFALESTAYHNTISRLKENILDLKDQIARNLHEYQDLLNVKIALDIEIATYRRLIEGSVTDPVLESRTSTKVLIKTTEIRDGEVLNESTQNREEPE"
misc_feature 34..219 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 229..1095 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1942 /gene="viml" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgtcgaccatctcctccaccactatctcgtcctaccgaaagcggtatggtcacgagagcagggccacgactgccgcgcgagggcaatccgacgcgccggcgatgctctacgcgagcagcaagaccaccggagcgtggagcggaactgtgtcggcggcggatgagactcacgacgtcagtctgtccggagcccttaacgccgattttaaagtctctcgcggcagcaataagtcgcttaacgaccgcttcgtcagttacgtagagaaggtgcagttgttggagcagcgcaatgaggctctgcgcacggagctggagcgctatcgtgggaacggaccctcgcgcatcgccgagctgtgcgcgcacgaagtggcggatctgcggcggcacgtggaccagctgaccaatgagaaagcgcgggcggagatacaacgggacaacttactcgtggacatagaacggatccgtgcgaagctgcaggaggagattctgcagagagagcaggctgagaggagcacacagagcttcagacaggatgtgaacattgctgctctagcacgagtggacctggagaggaaagtggagtcccttcaggacgaaattcggttcctgaagaagctccatgaagaggagctgagagagatacaggctcagagccagcagcagtctgatctgacctccgccctcagggaaatccaggtgcagtacgagaacctggcctccaagaatgctcacgtgtctgaggagtggtacgactccaagttcgccgaactctctgaagtcgcaaacagaaataaagaaactctgcgagcggccaagcgagaggccaatgagttccggtaccaggttcaggctcttaaccgtgaagtggacgccctcaaggggacaaacgaggctctggagcgacagatgagacagacagaggagaactttgctctggagtccacggcttatcacaacaccatcagccgtctgaaggaaaacatcctggacctaaaagaccagatagctcgaaacctgcacgagtaccaggacctgctcaacgttaagatagcgttggacatcgagatcgccacctacaggaggcttatagaaggatctgtaacagaccctgtgctggagtccagaacctccacgaaggttctcatcaagaccactgagatcagagatggagaggtgcttaatgagtctacgcagaaccgtgaagaaccggaatgacctccttctttccctacttcgattcacacctcgtcgaaacacacaacacacaacacacagcagcatcatccgtccctgtgaggcctacagaaataaccgccgtccctcagctgctacttttccagtgctttattcactcaggagttgactgagttctttcttctgaaattaacattaacgataataacgtctgagaaaccagacagcttttcactactttgaactgttaagatgattattttaagcattcaactcttttttttttttttttttttaattaatatagtagagaaatgttaggtgaattatttttcatgtagttactggataataagatcccaaatcttttggaaatgttttagaagttagtgagcgaaattaagtcattttaatacagtaaatgtttaacatctgggttcaaatccgatagaaagaaatcagtatataatgtgaagatgagcagaacaaaggatgagtgtaaaacttcctgcttcttcacattagggattcttcatactagtaaagttttaagagggcttaggcacaatgttttattcttcactgttcaaggttctttatttgtcacatacgtattacatgcagacatgtggggcgtttttccttagttcctcatgcaacgttgcgagaacggacagaaccgacatcaaactactgtaactgaggacttattatgaatataatcaaatctattaaacttctaattaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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