2024-04-26 07:22:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026301813 3871 bp mRNA linear VRT 10-APR-2020 DEFINITION PREDICTED: Mastacembelus armatus NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, mRNA. ACCESSION XM_026301813 VERSION XM_026301813.1 DBLINK BioProject: PRJNA489256 KEYWORDS RefSeq. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046654.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mastacembelus armatus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3871 /organism="Mastacembelus armatus" /mol_type="mRNA" /db_xref="taxon:205130" /chromosome="22" gene 1..3871 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:113127328" CDS 53..3601 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X2" /protein_id="XP_026157598.1" /db_xref="GeneID:113127328" /translation="
MRHIIMALFPAFAGLADNKVDDPSEELDWLNNKSFQARDALSLHSRFIEEKESSVGREVGSAEEEKEGEDNVPLKKKKKKSEKKRKKKKKHKKKSGRDSDSGGSDSDTIYPSDLKKEHEADRTQAAPLASRFSWLDDLHLPLEQPFCVDHKPDPANWTYKSLYRGDVARYKRKGSSSLGLDRRRQEVSWEESESRKKQKDKKKTADRYFSAVSRQLLRSEIPVPTLPVIPECGDVIKYPSFLQLSEDAEKKGGEAALWLQGKGQDKQKEDLQAGQSAVLLAGRTEEFNRRLREQPADTQLWIQFIQYQDELTSAMFGGEEEQQGNDSTEWRKSSYRAVLEKKLSIAERAVATNPGSVALQLERLRICQELWEPSVLAKEWKKLVFLHPNSTSLWRAYLLFTQSYFSNFTVSKVNSAYGKCLSTLSAVRDGTMVSHPALPGIEEDMLDIFTQQCHFLRQSGHTEKAISLFQAMMDFTFYKPDSVRELSTKQQVEFFEPFWDSGEARVGELGARGWKAWMVQQERGGWLQPSAEEEEEEEDEEEEVKDRRQPRWTVWLDVESSREAAQWLPWRPDKSKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELQLQLLLHFMSFLGLPVDSALFAAPSQPGLLLENLSLLTQGIDPLRPLTSHDLPDTGLNAVGHMTTLQGTKKWAGLGKQGETFITNVFNMVQAVLPVHHQAILSLSWIQYEKLKVLRCLRSGNKKRLRSQGKSSKRVAKRLLKESNNRSSLVLWREYAHLEWMLGNVDEARKVFSTATAMGGTKGLSSPSLCDLCLLWAQLEVENGVAVRGADLTDVTASPAVTVLTKLAEGTSTFSSSSDPLSPVSVLKARRSYEQILTASLAALDKDPNNSQTNIKGQEHLLEEKLRLKGLVGCYALFQYLTVGIQAANAVYSQARERIEEQYHTLTLDKQPNSNEGANLASTDSSNSAADSCYTSRNYMKRLASECEVLAVQQAALLRYHNSVSVFPLATLRQTLTSTLSTWCSSAPLWSIYVQVEDRYHSAGRARRFFHSVTRHTDSVVPRLFAIVVEQQRKQLVDAAQKSCCHDAALPILPENGLSNRIRGLFETAIATEIGAHCPLVWRMYMHFLVSEGKVDKATGIFYRALQNIPWAKGLYMDAVQLFPEHLQEFVDLMTEKELRLRLPLEELDILLED"
misc_feature 485..745 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(485..511,518..523,533..538,542..544,548..592, 599..607,611..619,647..655,665..670,674..679,686..706, 737..745) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 908..1912 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ttttttgttttttagcttaaactgacgacgtcatcttcccgcgactgtttttatgcgacatatcatcatggcgctgtttccagcttttgctggattagcagacaacaaagttgacgatccgtccgaagaattagactggctgaacaataagagctttcaggccagggacgccctctctcttcacagtcggtttatagaggaaaaggaatcaagtgtaggtagagaggtgggctctgcggaggaagagaaggaaggagaggacaatgtgccactcaaaaagaagaaaaagaaaagtgaaaagaaacgaaaaaagaagaaaaaacataaaaagaagagtggaagggattcggacagtggtgggtctgactctgacaccatctaccccagtgacctcaaaaaggaacatgaggcagataggacccaggccgctcccttagcaagtcgtttctcctggttggatgacctccacctgcccctggagcagccgttctgtgtggaccataaacctgatccagccaactggacatacaagtcactgtacagaggagacgtagcaaggtacaagaggaaaggcagctcctcactgggtctggaccgtcgcaggcaggaagtcagttgggaggaatcagaatcaagaaagaaacagaaagacaaaaagaaaacagcagacagatacttctctgcagtcagtcggcagctgctgaggtctgagattcctgttcctactttaccagtgatccctgagtgtggtgatgtcattaaatacccatcattcctccaattgagtgaggatgcggaaaagaaaggaggagaggcagccctttggctgcagggcaaaggacaggacaagcagaaggaggacctacaggctgggcagagtgctgtgctgttggccggcaggactgaagagtttaacagacggctgagagagcagccagcagacacacagctgtggatacagtttatacagtatcaggatgagctgacttcagccatgtttggaggggaggaggaacagcagggcaatgattcaactgagtggcgcaagtcttcctaccgagcggttctagagaaaaagctgagcatcgctgagcgtgctgtggccaccaaccctggctccgtagctctgcagctggagagactcaggatctgccaggagctctgggagccctcagttctggctaaagagtggaagaaattggtgttcctccacccaaacagcacctccctgtggagggcgtatctgcttttcacccagagctacttcagcaacttcactgtgtcaaaagtcaactctgcctatgggaagtgtctgagcacgctcagtgctgtgagggatggcaccatggtctctcaccccgcgttaccagggattgaggaggacatgttggatatcttcacccagcagtgtcatttcctgcgtcagtctggtcacacagagaaggcgatttctctctttcaggccatgatggactttactttttacaaacccgacagtgtacgagagctgtccaccaagcagcaggttgaattctttgaaccattctgggacagcggagaggcaagggttggagagttgggggccagaggctggaaagcctggatggtccaacaagagaggggggggtggctacagcccagtgcagaggaagaagaagaggaggaggatgaggaggaggaggtgaaggatcggagacagcccagatggactgtctggctggatgtggagtcatctcgcgaagcagctcagtggctgccctggaggcctgacaaatccaagggccagtcagaagaggactgtgaagacccggacagacaggtgctatttgacgacatcggcccatccctaatttgcctgtcatcacccgagcttcagctgcagcttcttctccatttcatgtcgttcctagggctgcctgtggactctgcgctctttgctgcaccttctcagcctggcctgctgctagagaacctttcactgctgactcagggtattgacccgctgcgtcctctgacctcccatgacctacctgacactgggcttaacgctgtaggtcacatgacaactctccaaggaacaaagaagtgggcagggctgggaaagcagggtgagacgtttatcacaaatgtgttcaatatggtccaagccgtccttcctgtgcatcaccaggctatcctgtcactcagctggattcagtatgagaaacttaaggtcttgcgctgcctacgcagtggcaacaaaaagcgtctccgctctcagggcaagagcagcaagcgggtggccaagcgactgctcaaagaatccaataaccgctcgtcattggtgctgtggcgagagtatgctcacctggagtggatgctgggcaacgttgacgaagctcgcaaagtgttctctacagctacagcaatggggggaaccaaagggctaagtagccccagtctctgcgacctttgtctgctgtgggcacagctggaggtggagaacggagtggctgtgcgaggcgcagatctaactgatgtaactgcttccccagctgtcacagtgctaaccaagttagctgaaggaacctccacattctcttcatcctccgaccccctctctccagtctctgtcctgaaagccaggaggtcatatgaacagattctaacagccagtttggcagcactggataaggaccctaacaactctcagaccaacataaaaggtcaagagcacctgcttgaggagaagctgaggttgaaaggcctggttggctgctatgctctgttccagtacctcacagtgggcatccaagcagctaacgccgtctatagccaggctagagagaggatagaggagcagtatcacacattaacactggataagcagcccaacagtaatgagggagccaaccttgctagcaccgattccagcaactctgcagctgattcctgctacaccagcaggaactatatgaagaggctggcttctgagtgtgaagtattagcagtacagcaggcagctttgctgaggtaccacaacagtgtcagtgtgttccccttggcaacactaagacaaactctgacttctaccctctccacctggtgtagcagtgcacctctctggagtatatatgtacaggttgaggaccgttaccatagtgctggccgagcacgccgcttttttcattctgtaactaggcacaccgacagtgtggtgccacgcctttttgccattgttgtcgaacaacaaaggaagcagctggtggacgctgctcagaagtcttgttgccatgacgctgccttgcccatccttccagagaatggcctcagcaaccgtatccgtggactgtttgaaactgccatagcaacagagataggtgctcactgtcctttagtttggaggatgtacatgcatttcctggtgtctgaagggaaggtggataaagccacagggatcttctacagggccttacagaatattccctgggctaagggcttgtacatggatgcagtgcagctgttccctgagcatctacaggagtttgttgatctgatgacagagaaagaactccgtctcagactgcctttagaagaactggatatactactggaagactgaacacacattcaagggctcactttgagtttgcttaagtggcaatatgacacctcacatattagcacacttaaagactacaggagatacacacctgagttcagatttatccacatataccctagctgttgtattaaacagtgatgttgcagtgatcttatgtaaagatgagcagagaagctacccttttgacatattgtctgaaatgctttattttaacaatataaatttgtttcagtacctgagatcttcaataaatgtaattctcattta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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