2024-04-27 04:41:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026300193 5706 bp mRNA linear VRT 10-APR-2020 DEFINITION PREDICTED: Mastacembelus armatus protein argonaute-4 (LOC113126231), transcript variant X3, mRNA. ACCESSION XM_026300193 VERSION XM_026300193.1 DBLINK BioProject: PRJNA489256 KEYWORDS RefSeq. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mastacembelus armatus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5706 /organism="Mastacembelus armatus" /mol_type="mRNA" /db_xref="taxon:205130" /chromosome="11" gene 1..5706 /gene="LOC113126231" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:113126231" CDS 171..2762 /gene="LOC113126231" /codon_start=1 /product="protein argonaute-4 isoform X3" /protein_id="XP_026155978.1" /db_xref="GeneID:113126231" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVMGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 252..641 /gene="LOC113126231" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 672..824 /gene="LOC113126231" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 825..1187 /gene="LOC113126231" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(981..983,1026..1028,1068..1070,1080..1082, 1134..1136,1155..1157,1161..1163) /gene="LOC113126231" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1326..2633 /gene="LOC113126231" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1737..1739,1749..1751,1785..1796,1803..1805, 1827..1829,1836..1838,1848..1850,1860..1862) /gene="LOC113126231" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1941..1943,1947..1949,2187..2189,2601..2603) /gene="LOC113126231" /note="active site" /db_xref="CDD:240015" ORIGIN
cagcagcagcggtagtccgggtcagtcagtccggtcaacaggcgtccacgcagctgtttaaattcccttttctttagttagtcactttaagcttcgcgataccgcccccaatttcagtgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcctgcccctacctctctgtttcagcctccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggttcagattcccaagattgatgtctatcattatgatatcgacatcaagcctgagaaacggcctcggagggttaacagggaggtggtggacaccatggtgcggcacttcaagatgcagatctttggagaccgacagcctggctatgatgggaagaggaacatgtacacagcacatccactgccaatagggagagacagggtggatctggaggtgaccctgcctggcgagggaaaggatcagacgttcaaagtgtctttgcagtgggtgtctgttgtcagtcttcagatgctgttggaagccctgtcaggtcaccttaacgaggttcccgaagactccgttcaggccctggatgttatcacacggcatctgccttccatgaggtacactccagtggggcgttcatttttctcgcctccggagggctattaccacccccttggtggaggcagggaggtgtggtttggtttccatcagtccgtccgtcctgccatgtggaacatgatgctcaacattgatgtgtcagccactgcgttctaccgtgctcagcctgtgatcgagttcatgtgcgaggtgctggatatacagaacatcaacgaacagacgaagccacttactgactcgcaacgtgtcaaattcaccaaggaaataagaggcctaaaagttgaggtcacacactgtggtcagatgaagagaaagtatcgtgtgtgcaatgtcacacgcagacctgccagccatcaaacgttccccttacagcttgagaatggccaagccatggagtgcacagtagctcagtatttcaaacagaagtacaatctgcagctcaagtatccacatttaccctgtctgcaagtaggtcaggaacagaagcacacctaccttcccctggaggtctgtaacatagtagcaggccagcgctgtatcaaaaaactaaccgacaaccagacatccaccatgatcaaagctacagctcgatcggcccctgacagacaagaagagatcagcagactggtcaaaagcaacagcatggtcgggggcccagacccttatctaaaggaatttggcattgtagtgcacaatgacatgacagaggttatggggcgtgttctccctgcgcccatgctgcagtatgggggccggaacaaaaccgttgccacacccaatcagggcgtgtgggacatgagggggaagcagttctacgccggcatcgagatcaaggtctgggctgtggcctgcttcgctccacagaaacagtgtcgggaggacctgctcaagagcttcactgaccagctgcgaaagatctccaaggatgctgggatgcccattcagggccagccgtgtttctgtaaatacgcccagggagctgacagtgtagagcccatgttcaaacacctcaaaatgtcttatgttggtctgcagctgatagtggtcatcctgcctggcaagacgcctgtctatgctgaggtgaagcgggtaggtgacaccctcctcggcatggccacccaatgtgtgcaggtgaagaatgtagtgaagacgtccccacaaaccctttccaacctctgcctcaagatcaatgccaagctgggaggcatcaacaatgtcctggtgcctcatcagaggccctctgtgttccagcagccagtcatcttcctgggtgctgatgtgacccatcctccagctggtgatgggaagaagccatcaatagcagcagtagtgggcagcatggatggccaccctagccgttactgcgcaacagtgcgagtccaaacatcccgacaagatatgtcccaggaacaactattcagccaggaggtaatccaagacttgaccaacatggtgcgtgagctgctcatacagttctacaagtccacccgcttcaagcccacacgcatcatttattatcgcggtggtgtgtcagagggacaaatgaaacaggtggcgtggccggagctgattgccatccggaaggcatgtatcagtctggaggaggattacagaccaggcatcacctacatcgtggtccagaaacgtcaccacactcgactcttctgctccgataaagctgagagggtggggaagagtggtaatgtccccgctggcaccacagtggacagcaccatcacacatccatctgagtttgacttctacctgtgcagccatgctggtattcagggaaccagtcgtccctcccactaccacgtcctgtgggatgacaactgtttcactgcagatgaactgcagctgctcacctaccagctgtgccacacctacgtccgctgcacacgctccgtttccatcccagcaccagcttattatgccaggctagtggctttccgagcccgctaccacctggtggacaaagaccatgacagtgctgaaggcagccacgtgtcgggccagagtaacggccgggacccacaggccttggcaaaagcggttcagatccactatgatacccagcacaccatgtactttgcctaagcaaatgagcacatcagccagtcaacccacagattccctttctttctgtcttttctgctctgatttgttaatttctcttcttctccagtgtctctcttcttgtagtctgtctttgtcttcacactcactgtacatttctgaatctgcaccaaagcagctcttggacagaaaaatctgctgcatctcgatatccagcaggttctgtttcatggaacagtctccagccagcgttcccagtcgagctgccttcctaaccagcaatccagcactgtgaaccgtaagggttcccagtgcacaaaagaaaaaacatgaaaaaacaaaaacaaaccataaacacatactacaaagttgagccattattttgagtttgtttttgttttttctatttgaatgtctgcactcgtgttttaagatacactgagcaagggagtgaattggcacaatatgtgtcagcgcagctctttagctctcccagctaagcaggactcttatctacttttacctcaacgcccctttgggcaaaatctgtcacaaggtcttgggtttattgggtggcggggagggaactctacatgaaaagagatggaggggagtcgaccttttgagaatgatatatatatatattttttcctttgtatgagcgtatgttttaactttctcctttacagtcttttacaagcgaggtgacctgtgtgtccatgcccattactactttcttcccatcttaccgaagtatagacaagtttgtgtgtgtgtgtgtgtctgtgtggaaaaagtctctgtatatacgtgtactgctgtatgagtgtttgtgtgcatgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagatttgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgagacatatgacttaaacaggcctcagaggctggtgtgggtatttgtagcagtcctggctcacttattaattgaaatgcattgagttacgttttgaacatgtgcattagtctgctgctagtgcacgattggtgggatttgcaccactggaaaccagctgttaataactaagttaatccagttcaactaataagtgaagtcaggtctgatgtgtagcagtagtgaccgtggtctggcctgtgactggctcagcattgggacctgttaaatggctgaaggcattaaacacaagagtatggtcttatcacccttgctttctgtgttaaaaatgggatcgtacttttctttggacctgactatctgaaaaattatattggatttttttttttttttttttttttaaactaatttaaacggcccaaaaccagcatagctttttttttttcttttctttttttttttttaaaaaaggtctcctttgctaatagtggccaattcattgcactgacccgggatgctaggcaagcaacagagggcactctcaaactctcttacctttatgcatttatacatacgaatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggctatcttaaaaaatgttgtttagaattagtagtttaccattgccgttgttatcgttgttgtcaatgttgttactattgtgatgaaattttaaggtttgcagcaaagccagttatatagtttcttgtgtgacttcaggaatagacatcagttgttgagctgcaggttaaggggtagagctttgaattggaagttttttctgtagcattcgggcaaatggtgagaagtagttttccttgggatggctgaatctatgcttcctctctaggttcttatgtcagtaaaggtaagcagcagactggaggtgttttgtagcaccctgaatggttagacagatgtgttcactcggctggtattggtttggatcaaatggatggagacaatcggggattgtagtcagagtgaacctagattaagggatttgttaaaagtggtttgccataggcagtgagtcgaaattgtagactttttaaaaatggtttctattactgtgtatttgaagtatacccatcttaaagtctactatttaatggtgtttgtttcatatttttatgcatttttaacactggattaaatgaattgacaataagcataagcactgcccttggacccccaaacaaacactgagcaaactgttgccatagaaatgatggtgacagctgtgccagtggttctcccttgtgttgtgattggataacactgtaggacagagggtttggagaaatggtcgacgtgcacgcctcatcggggggacagctcactgaaaacccttttgtaataaaccacccataaagcagcaggtttactatgaatgtgtttgagcacctgcctgttgaaggcgtgcgcgttggcgtcggttaagagcgaagagcaggtagtgaggagggggaacggggcgggtgttgtccaggcattgcatgcaataagttttactctgttttaaaggggagagatcggtttttaaatgtgcactagttttaccaagcgacgtgggctgtgattaaatattcatctggtttctctaatggagaataataatttttttttttttttttttttttaaattgcagtgcttcatcattaaactccactcagataaattatcactccctgtttgtaccatggcattgcaaagcaatattaacccagttctagttttcaaatgtggaaagacaaatctataattctactcattgtggttgttggtctactctcgctattgtctctgtacttttattttgtattgttttactttttttggttattttctttgcttgtatcaatcagtgggaatgtgcatttggtggaatagttatataggctttagacaattttctttacagtaataaaatgtagactttgctcgcctgca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]