2024-04-27 04:16:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025390929 3420 bp mRNA linear PRI 29-JUN-2018 DEFINITION PREDICTED: Theropithecus gelada NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_025390929 VERSION XM_025390929.1 DBLINK BioProject: PRJNA477372 KEYWORDS RefSeq. SOURCE Theropithecus gelada (gelada) ORGANISM Theropithecus gelada Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037675.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Theropithecus gelada Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3420 /organism="Theropithecus gelada" /mol_type="mRNA" /isolate="Dixy" /db_xref="taxon:9565" /chromosome="7b" /sex="female" /tissue_type="whole blood" /dev_stage="adult" /country="Ethiopia: Simien Mountains" /collection_date="Nov-2017" /collected_by="Simien Mountains Gelada Research Project" gene 1..3420 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 85 ESTs, 2 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112628271" CDS 357..3158 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X3" /protein_id="XP_025246714.1" /db_xref="GeneID:112628271" /translation="
MNIDGAAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDTQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHNLQFQLVEAFLQFLGVPSGLTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPSFSGASCVGRMDRLGCPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRGAATARAVHILTKLTESSPCGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSDPAPTDSCSRLISLAKCFMLFQYLTTGIDAAVRIYEQVFAKLNSYVFPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKALEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLTHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 600..1598 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gtggtcatggcgctgttcccggcctttgcggggattagtgaggctcccgatagcgggagctccaggaaagtcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacgggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctacagaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacattgacggagctgccatcagcagtaaaactgaacctccctcatctgagcccatctcctttataccagtgaaggacttggaagatgcggctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagacacacagccagacagcgagagtgcagctctcaaggccaaggtggaggagtttaacaggagggtgcgggagaatcctcgggatacgcagctgtggatggccttcgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagcactttgtctgccgttaaggacggcagcatcttatctcaccctgcgttgcctggcacggaagaggccatgtttgcactcttccttcagcagtgccactttctgcggcaggccggccactctgagaaggccgtctcattgttccaggccatggtggacttcaccttctttaaacctgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaaaggagcccgaggctggaaggcatggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaagatgacgatgaaccagaagaggatgaccaggaaataaaagataagactctgccccggtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcggccctggcgccctgataagaccaagaagcaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttccagccacaatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggccttactcctccagcctcttgtctttatctggctatggatgagaacagcatctttgataatggactttatgatgaaaagcccttgacttttttcaacccctcattttccggggctagctgtgttggccgcatggatcggttgggctgtcctcgctggaccaggggtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcctttgttttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtaatttggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacatctagagtggttgcttggcaacacggaggatgccagaaaagtttttgacacagcactcggcatggcaggaagcagagaactgaaagactccgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccggaagtgagaggggctgccacggcccgagctgttcacatattaaccaagctgactgagagcagcccctgtgggccctacactggacaggtgttggctgttcacattttgaaagcgcgaaaggcttatgagcacgcgctgcaggactgtttgggtgacagttgtgtctccgatccagctcccaccgattcctgtagccgcctaattagcttggctaaatgcttcatgctcttccagtatttgaccacagggattgatgctgctgtgcggatatacgaacaggtatttgcaaaactgaacagttatgttttcccagaaggctctggcgagggggacagtgccagctcccagagttggaccagtgttctcgaagccatcacactgatgcatacgagcctgctgaggttccacatgaaagtgagtgtttacccgctggcccctctgcgagaggcgctctcacaggctttaaagttgtatccgggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaagaccaggagattttttgacacaatcaccaggtctgccaaagccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccacgccacaattcctgagaccggcttaacgcatcgaatccaagccctgtttgaaaacgccatgcgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctggtttccttaggaaataaagaaagaagcaaaggtgtattctacaaagcgcttcagaactgcccttgggcaaaggtgttatacctggacgctgtggagtacttccccgacgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccgctggaggagctggagctgctgctggaggattagagagcagcaaggccaagtcgcccaccctgcagagctaggaggcgtgagcggagaacgtgtgtgttaggagacctcggctttcgaaatgttctttctcgatggtaataatgtgggctgccagcctcttcacatcttgcacactttttgggtgtgtaaatgacacaaaagctatttacatattatatatgtgaatatgtgtatatttgtatatagccagagagtcatgccaaggggtcattaaaccgatgatgattgacgtgtg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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