2024-09-08 11:41:49, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_024651181 3513 bp mRNA linear INV 10-APR-2018 DEFINITION Strongyloides ratti Argonaute/Dicer protein, PAZ domain and Stem cell self-renewal protein Piwi domain and Ribonuclease H-like domain and Protein of unknown function DUF2650 family-containing protein (SRAE_2000036100), partial mRNA. ACCESSION XM_024651181 VERSION XM_024651181.1 DBLINK BioProject: PRJNA304930 BioSample: SAMEA1682816 KEYWORDS RefSeq. SOURCE Strongyloides ratti ORGANISM Strongyloides ratti Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Strongyloididae; Strongyloides. REFERENCE 1 (bases 1 to 3513) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-APR-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 AUTHORS Aslett,A.Martin. TITLE Direct Submission JOURNAL Submitted (16-SEP-2014) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge Cambridgeshire. CB10 1SA, United Kingdom COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_037308). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3513 /organism="Strongyloides ratti" /mol_type="mRNA" /strain="ED321 Heterogonic" /db_xref="taxon:34506" /chromosome="2" gene <1..>3513 /locus_tag="SRAE_2000036100" /db_xref="GeneID:36378048" CDS 1..3513 /locus_tag="SRAE_2000036100" /codon_start=1 /product="Argonaute/Dicer protein, PAZ domain and Stem cell self-renewal protein Piwi domain and Ribonuclease H-like domain and Protein of unknown function DUF2650 family-containing protein" /protein_id="XP_024504884.1" /db_xref="GeneID:36378048" /db_xref="GOA:A0A090MXM3" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR022559" /db_xref="InterPro:IPR032472" /db_xref="InterPro:IPR032474" /db_xref="UniProtKB/TrEMBL:A0A090MXM3" /translation="
MSNNYCESSSRQLHSYPSFTNNFDDSCDSKTSYNYSRKSPFIKEFLSSKSCSSTNYGLSNFKKQCNYPQEHSTEKISNDISSENFPSHDYPILPQFTGENLNSNTYLSNSSYSSDDSDNINFLLSNDETKSKPSSGFFTNSNSSQYSYEDDNGSLIKYAERPNFGCNGRVVSLKTNFFEITFSKAPVVMQYHVEITFSGTRNLERDENRNIFWKAVEEHPEIFPNKFALAYDGNHQLYVAGKINMKGDTHHQCILVNVSIWKDSRPSITFVVNITWCGPVLLDLKRDYTTVDQHRPVTPIQIIDIIFKQSLTCPFVEQSSNFYCWKSSAYRMPVNGADALSIGGAKQVWTGFFSAALVALGYRALLNVDIDYTVFYKPKISILQFLCDVLNEKYGSTNCNSKNLGSRYNNNYRNKGLYCDSYSGYNKFDEISISYLMRNGQEPWTVENLCEINRLTESEFKIFDDAIKGLKIRVRSKDGHQRVYRVNGTKGSADQLTFFIKVGDKDEKTSVADYFQKKYGSLKYPSLPCLHVGPYHRNTYFPLEVCYLEDHQKYTKKLSEKHTAAIIKAAAVDAQQREDRIQALFKDACFENDLFLKSFGLSIAPKMVEVIGRVIEPPGIQYGPNINPNIDTKVFPIDGAWSMDNQSLYLPATCESYALMALISPKDEHILQNFAINLAQKAQQMGMKFPNWPDVVKYGRAVPFEIKTLYREISEYYVHSGKNCSLVIIVLPCKNADVYMTIKENSDVCYGVMSQCILYKNVSRLSPATLSNLILKLNLKLGGINAAITPNNMNDKYLINQPTLVIGIDVTHPTQIEMKNHVPSVAAVVGNIDMYPQTFAATVIVQKKCRQEVVDLVQAMVIRIKHFKECTGMKPKRILVYRDGVSEGQFQEVMKKEMVGIRNACRLFDPNYNPPITYIVVQKRHHARMFCRHLNDAVGKARNIPPGTIVDTGITSSDGFDFYLCSHFGIQGTSRPAHYHVLWDDSKFTSDEIQALSYHLCHNFGRCNRSVSIPTPVYYADLVCTRSRLHVKRALGVLETDNEYDDVSPSGIHLPHRKELFKNLGVYSVIGTQEAMGLWCPGYLLGPQCEEDGILTYSECCGDLHHQCCTNLRYWVIFLLVTSSITILLIFGICLWKKVFQNKTNNFIETRQPPRSGYTPGVRTGRPDAI"
misc_feature 1342..1638 /locus_tag="SRAE_2000036100" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1450..1452,1492..1494,1531..1533,1543..1545, 1594..1596,1615..1617,1621..1623) /locus_tag="SRAE_2000036100" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1783..3090 /locus_tag="SRAE_2000036100" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2215..2217,2227..2229,2263..2274,2281..2283, 2305..2307,2314..2316,2326..2328,2338..2340) /locus_tag="SRAE_2000036100" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2425..2427,2431..2433,2647..2649,3061..3063) /locus_tag="SRAE_2000036100" /note="active site" /db_xref="CDD:240015" misc_feature 3265..3363 /locus_tag="SRAE_2000036100" /note="Protein of unknown function (DUF2650); Region: DUF2650; pfam10853" /db_xref="CDD:463190" ORIGIN
atgtctaataattattgtgaatcatcatctaggcaactacatagttacccgagtttcacaaacaattttgatgattcatgtgattcaaagacatcttataattacagcagaaaatctccatttattaaagagtttctatcatcaaaatcatgttcttcaacaaattatggtttgagtaattttaaaaaacaatgtaattatccacaagaacattcaacagaaaaaatttctaatgatatatcctctgaaaattttccatcacatgactatccaattttacctcaatttactggagaaaatttaaattcaaatacatatctaagtaattcatcatattcctctgatgatagtgataatattaattttttgttgtcaaatgatgaaactaaaagtaaaccatcttcagggttttttacaaattcgaattcttcacaatattcttatgaagatgacaatggttcattaattaaatatgctgaaaggccaaattttggatgtaatggcagagttgtttctttaaaaacaaatttttttgaaataacattttcaaaggctccagttgttatgcaatatcatgttgaaattacttttagtggtacacgtaatttagaacgtgatgaaaatagaaatatattttggaaagcagttgaagaacatcctgagatatttcctaataaatttgcacttgcttatgatggaaaccaccaattatatgtagctggtaaaattaatatgaaaggagatacgcatcatcaatgtattcttgtaaatgtatcaatttggaaagattctagacctagcattacttttgttgttaatattacatggtgtggacctgttttattagatttaaaaagagactatactacagttgatcaacatcgtcctgttacaccgattcaaattattgatattatttttaaacaaagtcttacttgcccatttgtagaacaatcttctaatttctattgttggaaatcatcagcttatcgtatgcctgttaatggtgctgatgctttgtcaattggtggtgctaaacaagtttggacaggatttttttcagctgctcttgtagcattaggatatagagctcttcttaatgttgatattgattatacagttttttataaaccaaaaatttcaattttacaatttctatgtgatgttttaaatgaaaaatatggatcaacaaattgtaattcaaaaaatcttggttctagatataataataattatagaaataaaggattatattgtgactcatattctggatataataaatttgatgaaatatctatttcatatcttatgagaaatggtcaggaaccgtggacagttgaaaatttgtgtgaaataaatcgtttaacagaatcagaatttaagatatttgatgacgccataaaaggattaaaaattcgtgtacgttcaaaagatgggcatcaaagagtgtaccgtgttaatggaactaaaggatcagctgatcaacttacttttttcataaaagttggtgacaaagatgagaaaacttctgttgctgattattttcaaaagaaatatggttcacttaaatatccatctttaccatgtttacatgttggtccatatcatagaaatacatattttccattggaagtttgttacttagaagatcatcaaaagtatacaaaaaaacttagtgaaaaacacacagcagctattattaaagctgctgctgttgatgctcaacaaagagaagatagaattcaagcattatttaaagatgcatgttttgaaaatgatctatttttaaaaagttttggtcttagtattgctccaaagatggttgaagtaattggaagagttattgaacctcctggtatacaatatggtccaaatattaatcctaacatagatactaaggtttttccaatagatggtgcatggagtatggataatcaatcgttatatttaccagcaacttgtgaatcctatgcattaatggctttaatatctcctaaagatgaacatatattacaaaattttgcaataaacttagctcagaaagctcaacaaatgggtatgaaatttccaaactggccagatgttgttaaatatggtagagcagtaccatttgaaataaaaacgttgtatcgtgaaataagtgaatattatgttcattcgggaaaaaattgtagtcttgttataatagttcttccatgtaaaaatgcagatgtttatatgacaataaaagaaaattctgatgtttgttatggagttatgtcacaatgtattttatataaaaatgtttctaggctttctccagcaacacttagtaatttaatacttaaattaaatcttaaattaggtggtataaatgcagcaattacacctaataatatgaatgataaatatcttataaatcaaccaacattagttattggtattgatgtaactcatccaacacaaattgaaatgaaaaatcatgtaccatcagttgctgctgttgttggtaatattgatatgtatccacaaacttttgctgctacagttattgttcaaaagaaatgtcgtcaagaagttgttgaccttgttcaagctatggttataagaatcaaacattttaaagaatgtactggaatgaaaccaaaaagaattttagtttatagagatggtgtttcagaaggacaatttcaagaagttatgaaaaaagaaatggttggtattagaaatgcatgtcgattatttgatccaaattacaatccaccaataacttatatagttgttcaaaaacggcatcatgcaagaatgttttgtagacatttaaatgatgctgttggaaaagctagaaatattccaccaggaactattgttgatacaggaattacatcttcagatggttttgacttttatctttgttcacattttggtattcaagggacaagtagacctgctcattatcatgttttatgggatgattctaaatttacatctgatgagattcaagcattaagttatcatctttgtcataattttggaagatgtaatagaagtgtatcaattcctacacctgtatattatgctgatttagtttgtacaagatcaagacttcatgttaaaagagctttaggtgttttagaaacagataatgaatatgatgatgtttcaccatcaggaattcatttacctcatcgtaaagaattatttaaaaacttaggagtttattctgttattggtacacaagaagctatgggtttatggtgtccaggatatcttcttggaccacaatgtgaagaagatggaattttgacgtattcagaatgttgtggagatctacatcatcaatgttgtacaaatttaagatattgggttatttttttactcgttacttcttcaataactattttattgatattcggtatttgtttatggaaaaaagtttttcaaaataaaacaaataattttattgaaacaaggcaacctccaagaagtggatatactccaggtgtcagaacaggaagacccgacgctatttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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