LOCUS       XM_023200858            2392 bp    mRNA    linear   PRI 30-DEC-2019
DEFINITION  PREDICTED: Piliocolobus tephrosceles retina and anterior neural
            fold homeobox 2 (RAX2), transcript variant X1, mRNA.
ACCESSION   XM_023200858
VERSION     XM_023200858.3
DBLINK      BioProject: PRJNA419387
KEYWORDS    RefSeq.
SOURCE      Piliocolobus tephrosceles (Ugandan red Colobus)
  ORGANISM  Piliocolobus tephrosceles
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Colobinae; Piliocolobus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045454.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 30, 2019 this sequence version replaced XM_023200858.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Piliocolobus tephrosceles Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Piliocolobus tephrosceles"
                     /mol_type="mRNA"
                     /isolate="RC106"
                     /isolation_source="whole blood"
                     /db_xref="taxon:591936"
                     /chromosome="21"
                     /sex="male"
                     /country="Uganda: Kibale National Park"
                     /lat_lon="0.4862 N 30.3897 E"
                     /collection_date="27-Jul-2014"
     gene            1..2392
                     /gene="RAX2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:111534229"
     CDS             187..879
                     /gene="RAX2"
                     /codon_start=1
                     /product="retina and anterior neural fold homeobox protein
                     2 isoform X1"
                     /protein_id="XP_023056626.1"
                     /db_xref="GeneID:111534229"
                     /translation="

MPAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFAHPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"

     misc_feature    order(406..420,424..426,475..477,493..495,532..534,
                     538..543,550..555,559..567,571..576)
                     /gene="RAX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(412..414,421..423,541..543,550..555,562..564)
                     /gene="RAX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    415..573
                     /gene="RAX2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

agcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgcagtgggcggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccagccgtctccccgccatctgtcccactgccgtctcgccaggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcactacctaccagctgcaccagctggagcgggcgtttgaggcctcccactacccggatgtatacagccgcgaggagctggcggccaaggtgcacctcccggaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtcgcagccccgagacttcccgaggccccggcgctgcccttcgcccaccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagacggctttgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcctgggccccctccttggttcgacctgagagctggagaagtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggatcagagacaggctgctgggtcccctgcccccatcctgtccccgccccccatcgccacccgtcctgctggcagcggaccggcccccagtgtcaggcaggaggtgacccacgtattcctaggccgggaacggggggccctcctcccctcctggggcctcagtctcccgtctgctgatggggtgtgggggcctctgaggttcctgggctgtgaggctgtgagtggcagggccgctgactctgtaagatgagtctacatctctctgccgctcccactccccattagcagagctgcccgctctccaggctcccggtgctcccgaaatgacaataacagcagctcccgcgagcctggtctcctttcacggtgcacccaccgcgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccgggtccccagggtcgcacggctaggagtgggtgaagctgcctttccgacccatcaccggccccaccatctgaggcacggcagcaggttctggagggagggtgggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcgtcagcccctccctgttcctcgcatccccacagaccccaggccccgtgcatgtcccccagccctgcggaggcacggccggcgtctgctctgtccgacccagttgcattgcccaagagctctaagcaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagcacagcaggaagggccctgagccacgggatgggacagtcttggccagggccaccccctgggacagaagtgcggcaccagggcaggagctgcagtagctactctcctcgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctccaggcggcacctcacacaccagtcctgtggcccgacgcccagccaatgtcactgtgcaccaggcactgaggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgcactcccagtgctttgggacgctgaggtgggaggagtgcttgagaccagcctgggtgacatagcaagacccagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacgcttgtcatcccagggacccgagaagctgaggcaggaggatggcttgagcccaggaggtcgaggctgcagggagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaacacaaacctaaa

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