2025-04-03 19:45:52, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_022439157 2194 bp mRNA linear INV 14-SEP-2017 DEFINITION PREDICTED: Crassostrea virginica CUB and sushi domain-containing protein 2-like (LOC111104980), mRNA. ACCESSION XM_022439157 VERSION XM_022439157.1 DBLINK BioProject: PRJNA379157 KEYWORDS RefSeq; includes ab initio. SOURCE Crassostrea virginica (eastern oyster) ORGANISM Crassostrea virginica Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_035786.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Crassostrea virginica Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2194 /organism="Crassostrea virginica" /mol_type="mRNA" /isolate="RU13XGHG1-28" /isolation_source="Rutgers Haskin Shellfish Research Laboratory inbred lines (NJ)" /db_xref="taxon:6565" /chromosome="7" /tissue_type="whole sample" /geo_loc_name="USA" /collection_date="22-Mar-2015" gene 1..2194 /gene="LOC111104980" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111104980" CDS 80..2194 /gene="LOC111104980" /codon_start=1 /product="CUB and sushi domain-containing protein 2-like" /protein_id="XP_022294865.1" /db_xref="GeneID:111104980" /translation="
MTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTCHWNKSMTLNSTCKADGTWTSSASVCPTGPPECPVDHPDANLTNVKVTSTSIGTTLSYTTR"
ORIGIN
cgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacacatgtcattggaataaatcaatgaccttgaactcaacatgcaaagctgatggtacctggacatcttcggcttccgtttgccctaccggcccaccagaatgccctgttgatcaccctgacgcaaacttaaccaatgtcaaggtcacttccactagcatcgggacgactctttcttacaccactcggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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