2024-04-19 20:44:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021939353 12243 bp mRNA linear PRI 20-NOV-2019 DEFINITION PREDICTED: Papio anubis argonaute RISC component 1 (AGO1), transcript variant X5, mRNA. ACCESSION XM_021939353 VERSION XM_021939353.2 DBLINK BioProject: PRJNA576697 KEYWORDS RefSeq. SOURCE Papio anubis (olive baboon) ORGANISM Papio anubis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044976.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 20, 2019 this sequence version replaced XM_021939353.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Papio anubis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12243 /organism="Papio anubis" /mol_type="mRNA" /isolate="15944" /db_xref="taxon:9555" /chromosome="1" /sex="male" /tissue_type="whole blood" gene 1..12243 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 302 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:101004595" CDS 142..2271 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X5" /protein_id="XP_021795045.1" /db_xref="GeneID:101004595" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 208..360 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 361..723 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(517..519,562..564,604..606,616..618,670..672, 691..693,697..699) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 856..2142 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1276..1278,1288..1290,1324..1335,1342..1344, 1366..1368,1375..1377,1387..1389,1399..1401) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1480..1482,1486..1488,1696..1698,2110..2112) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
ggctagccattgtgagctggcgaatgctgcatgaggccctggtcagcggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgcgttcgcttcaccaaggagatcaagggcctgaaggtggaagtcacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcaacgctgtattaaaaagctgaccgacaaccagacttcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcccagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattattgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaggtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtacagcgaccacgccaagagatcattgaagacttgtcctacatggtgcgtgagctcctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttctgtgctgacaagaacgagcgaattgggaagagtggtaacatcccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgttctttgggatgacaaccgtttcacagcggatgagctccagatcctgacgtaccagctgtgccacacttacgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcaaagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcatcaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggagctgtgccacccaaatccagaggaagcaaggaggagggaggtggggtagggaggagtgtaggacgccttgtttccttctgtagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccctacccctcaccccatcttgtcacatctggccctgaccccaatggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcaactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccatccccccttccccttattcctctctgtccacattttctgccccaccttacttctcctccctgacagacatccagcccctagtaatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaagtaccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaattgacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccacccaggtctggagttactttcatagcatttttcactcttggcttcttttctcccttgatggtcaagtctcttgtgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtgtattgccaaaatttggaaatccttcccatgcctgatgagtttatatcccggaaacattgagccatcagaatgaactgtgtacctgatttgttctctgacctggctaggtagggagggggtggttatcaccccaagatggggtccgggctccatccttcctctgtgcagataatacctttctcttgctgtagcctccctcctctgcactgtcctgcactctttcttgcaagtgcatctttttccttcctctggactgtcctctgaccctttggctcatcctagattccagtgtgtcctgtggacaggctggggaattttgctgctccctattgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtggcatgagctttttttcttctttttgtcttgagacatggggtttggctgtcttgcaggactggagaaggtggtggttctagcttggtctctgctggccttgaagcaagcatccccccctgccctttttccttgactgttcatttttttcctgccccaccgcttgggatggggagttgcaacttcagtgtggaatttcctctttttgaggagcctgggtttggatctatctgatctggtgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggcaggagggtctaaatcctggcctatagagttagaactaccgtttcctctcctcagctgcccttgtatgacccggatttgctatgcaaaacaatctgtcccaggttctgttctggttggctacattgttcagcaactcacaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttacttttttcctgctggctacagcatggggtgccctataggcacaagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatacagtctacttcgtgttctgtcaccctttggggaggggagctcttctgggacagtgggctctgcatgttctctacttgggtacattttggggctaggatcagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtccatagggagcaggtggcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggttatcagctggggcttgagcttgaaatgcatttttagccctttggcatggcatatgccattcaagaaataaaaaagcaagagaatcagctttgggcaatgacaagaaatgacttcttactctgatttttttgtaaaaaaataatttttgagacttgaaaaataaccctgaccttgaggattattcttgtttgaaaggtggtggatgcagatggagaagtggtgttggcagcaagctttggctcatgtggatttggtttaagtggtgcttcttacccaagcttcaaggaagtgcttgggggacccccagcctcatcctcttagatgggtctcttgctccctttgtaccactgttttgccttccttttcctcttctctttttccctggcttcctttcccttttctactattcactctgcttgcttgctggccggcctgcctgcctgcctgcctgcctgcctatgtgataatgaaatctctgcatggctgcaatgatcccactgttagctggcaaggtcaggcttagctccttgactgcagacgaccaagaacctgttccccaagcccagagatgttcacctgggctggactgccctcaagcttatactagagaagagcaactgacctgcccaacttgtgtgaagtcaggagggtttctggcattttccacacctgtccactccttggagctggtttctctcattgcttttactaaatctggttctttttctctttacctggggcctgccttttctgagattgtcttagggttgagctacttgggtatcctgggcttgagtgttaggggatggacataagggaaagagtgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagagccctgttctttgattgtttatccagtccaacctgatccattagggattgaggtgctacactggcctccagggataagcctggggctattgttgctgggaacttatgcttaacataaagccgaagaagaaggtacctagaattttgaaacttccctaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcagtgtttttggatacttctcttcttctgtttgtgaataaggccagcactcaagatgggcagacaagggcacgctattagctggcccataggatatctgtaaggctggtgggacaattttggacctggaatcctgtgaactaacaaggttggaagtttcttccccttcagggtagaaaaatcatctcaaactaaccaaaaggcagttttggaaactacattgggggaagttatttttatttatatatggggcctaggccaatccaggatggtagctggaataccttccttcttaaaatctgatcatggcagggatatgcagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcctccaacttaataggacttgccttctccctgggcagggagagaggctgggttggtgctctccccttactctactcacactgacttagaacctctggctgctgtttgggcatccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacattcgtcaaatgtactgagtcccttggtgtagtagcaataaggaaaaatgaaattactttcctgtgcacacagtccagcctaattggtgtgtgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccatcgtgaaactatcccagcagctgtaatgtacagttccttctgaagcaagcaacagcagcagcagcagcagcagcagcagcacaattctgtgttttataaagaacagtggcttctatttctgaagtgcggtctttctctttttttcctaccagcaaaacaaacttttgggactgattacatctctaatagattttaggtgagaataatactgtagattgttatgcaggaatacttcacagggcctccatttattcttcattcaacaaacatgcaaagtactgtgccagcagtattgtggggagggcaggcacaattcaaaatgaggaaaatagtgtctgtctcattaagggaattaagtttggtgggggatatgactagccaactggtcccctggcataggagaaagataatgagggagtggaataagactatagcaacgaatatagggaggaagggacagatttgagagacaagagatagaattagtaggactcgatggctggtggaagacaagagtagaggttagctcccaggtttctccttgagcataggagtgtgttgggacattctgccagtcaagatgggggtggcagggggagactgtagaaggaaggtggggagttttttgaagaaagacaatgttgtgtagactgagttttgaggtttttttggggcaataagggtaaggtgtccagtaaacacaggttggtgctcaggtaagactaaaactgcatttatggatatgggagtcatatagatggtagttaaagccataggcatgaacaagttagcttaggaaaagagaagagaaacatagtatacaaccccctaagaaactcagtttaaaggatggggcaaggaagtagatcttaaggtgacagatcactggtagaaagcttgtgggttttttgtttctttgtttaaccagtttagtgaggtaggagaagaaatcagagtagaagtttcatgaagggtgtgattaacaacatgaactgctgcagagaaggagttcttttttttctgtgtgttttacctttctgctccccatctgttggggatcttataactctatgacctacttaggttattctccagtatttcttgaaaatgagcattggaaaaaccaattctaaaatggctaagactaggactttcaagttccccacaactaccaccaattaggagataattgtaaaagaataaacaaaacctaattttgttccagtgtactagataatagtagaatactatatttatttccataacttgtcttctttagagcctgtgaactcctaggagcagaagctatattctcttcatttttgtcatctcagggtcatggcatataccaacagatcagtatgtgcaaatagaattgaaataggctagtagtctgtagtttatgagtatgggctgggtgggcagcagatcaagaagtgataggagtacacaggatgaactcagaattcctgaaatctttaggtaagcagatacttaaccagattatcattgtcttttcccactcaccccaaattggaggttttatggttttgtactttaagctggtggtataattgtcaagcatgtaaattctggcattcttcctggtactgctagagcattgttatttcaatgcatgggggtaagaaggctcagagaaggattctggcagagggcccagtgagaaatcatcagtggtagccagtgtgtacatacgttgacctagcattcctctggaggccaagtgttgtgaattggcctgtggctatcacctggcagactcccttgggaaagagctagccagccccatgcttcttttcagcagcaagggttagggaggttggttgaacttgaagagcagattagacatggagcagattttgcccagttgaaataagacatatatttatgaccccgagtgaggcagaaataaagtacttagcagggggaatgggaggatgatgattatggcaaattttgctataacctttagttttagaaaagattgatactgaaaagccttcaggatttgcctgtggttgctacttaagttaaaaaagactgggagcctgcattgtctggtcctggagctcaaggttttcagtgaaggcctgtcctggcacctctgggcattccttttcattactagttgagcacccttccttctgctctgtcagttggcagaatactctggagcacattctggactagcagttgccttggggtagtcagcctgggtatttgtttggtatctcttggtgtagcagatcccagaatctcacggcaatttggatttggtggctaaaagaaagagttagtgcaaggaaaagactagttggaagttctgagtctgggccatccttaagctgctgtctactgcttgaatgggaagtaatgttgaattggaaaattagctcaccttttttgttcctagctttgcagacatttattcctctgatgataggctgagaaatgcctaggcaggcttagaaggcacacagagcatgacagaagtactctgtcaaagcagctgtgtcaagaaggaagagctggaaaagtggatatgctggggaattagccacatttagttttccacttacgcacaactgccttctccagtatatcatagaagggttttttaggcctttgtggcttaccctgcaggaacatactatcctgttgttctggactgtagcaccttcaccaccatcctcttggcaatggttttttgttttggggtttttttttttttttttttttgacaaagtataatattgagggacctttttagggagcctttgatcctttgtccccattttccaaaggcagggaactttcctcttaaaagagacagtgggaacttttagccaggtttttggaaaaggcctgtgagctattaatgagagtgagctgcaaaaggaggaagggtttgtttgggtgctttgaagtacttggctaggtgttttctacagtatcttatacaattgcatcttacagcatctttacatgcaaaatagtttatcagttatcttcaattgcatattacaaaattctgattaaatttttcttaaataagaaaactatcatttcatatgacaagaaagcctaatttaatgttactccaaggttggttaattcagtggctcagtgataacaccaaagaattagtttcttgaaatctttttggtctgccatcctccatgttgtttatccttacgccagttcgcctcatggtcccaaaatggctactgtaattccgggaaggaaatgctgacagaaccatgcctggcaaaagagacaaatttttccgtgtccttctaaagcaaggaagtcttttcctggaagctccagcatatccggcctcatggctttgctagaaatgggtcatctcactcctgtcattggcaaagcaagtaagatcatccatcatgagtggcttagatgaatgaattatcctttgagtcacgtagactagaaagtccagtcatgtctaccagcaagaaaggagataagggctattggataagcagcgtctggtctcaaaggtacttcaacttttacagatgagaaacatgaatctgaatgactttcctaggctcacagcaagagagggccttcagtgttagctgtgtctgtccctaaagcccaagttttatattgtatcttgctacagtgtaaagtaacttactttctaccttgtggaaactgatggtctaggacaagagatttgaactcaggtgcccaggtgactctaatcttggcccatgtgagaagattctactgagttgctgtcctcatccagtgatgtttcttgtctcacacaagaagcctaggagtagaaagtcctaagtggagtagaataatagtggcagcagggagggaagtgtgcactgtgtgtccctgagcctgacttactgggcaggaacttggcgcttaaagtggcagctggccaccctgtctttcctgcatgcactgagtatttggtagctgattatgcctttccttagtgaccagtgatattgatcatcttttcatgtgcttacttactatccccgtatctttgttgttcacatcttttacccattgtatttgttgtttttgagacagtgtctcactctgtcacccaggctggagtgcagtggcacgatcacggctcactgcagtttctgcctcctggtctcaagcagtcctcccacctcagccttctgagtagctgggcttacaggcatacactgccatgcccagctaatttttttaaaaaaaaattttttttggtagcagttcggtctcattattactgcccaggctggcctctctcagcttcaagctatcttcccgcctcggccttccaaagtgccggaattacaggcataagccactgggcccagcctcttttacctgtttcaaaattgagttttattgagttgtaagagttctttattcattttaaacacaagtccattgttggttatatcttttacatctatttttcccagtctggcttgccttttcattttgaagagcaaaagtttaaaatgttgtgaatttattaaagctccatttgttgcttttttcttttctagtttatacttttgtgtcatattttaggaaattttgcactgggtatttgatggctcctgaggaggttcaactttcagagggcactgatttctctgcacctgaaattttgtactatttctgtatttctttcttctcagaacaaccagtgtcaccaggtatgagggcagagttttagcttgtttgctgagccccattcttgaagcttatttatttattcatctatctatccatccatcaatccaacaaatatactgaatgctgctatgtgccaggcactggcactgttctaggtactggggcaatgggagttaaggtaatacccaatgaccctgctctgtacccttaagagcagactcacttggggatgagttatccaaaaatagggtgtacatgtagtcaggagagagcctcatacagctttgcctttggcagaatccttcaaacctctttgtcttcctacttcttgatattacaaatcatgagcctttcacatgcgttcactctaaagaggtgggttcctggatagcagaagtagatagaaaggcatcattgacatttattgagatggagtgaatcagagggtgtaaattctgctccgtcaatgtcgaaaaagactagccgatctcaagggttcatcactgtcaccatgtctattgtctattctggaagaagctgaagaagtctgcctttgtttagggaaccagttccagaatcagaggggttgaggatataaaagacccttgcacaagagttggtatttaccctgtcagatgctgctaccaagatttggattgtgtacagtcgaggattaaaaatgacttttaagat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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