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2024-03-29 20:40:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021554754            5913 bp    mRNA    linear   VRT 05-NOV-2019
DEFINITION  PREDICTED: Lonchura striata domestica argonaute RISC component 4
            (AGO4), transcript variant X3, mRNA.
ACCESSION   XM_021554754
VERSION     XM_021554754.2
DBLINK      BioProject: PRJNA391487
KEYWORDS    RefSeq.
SOURCE      Lonchura striata domestica (Bengalese finch)
  ORGANISM  Lonchura striata domestica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea;
            Estrildidae; Estrildinae; Lonchura.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042588.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 5, 2019 this sequence version replaced XM_021554754.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Lonchura striata domestica
                                           Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5913
                     /organism="Lonchura striata domestica"
                     /mol_type="mRNA"
                     /isolate="Mets1"
                     /sub_species="domestica"
                     /db_xref="taxon:299123"
                     /chromosome="23"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..5913
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:110484233"
     CDS             91..2364
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_021410429.1"
                     /db_xref="GeneID:110484233"
                     /translation="
MEVTLPGEGKDQTFKVSIQWVSVVSLQMLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNISEQSKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    <106..243
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    274..426
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    427..789
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(583..585,628..630,670..672,682..684,736..738,
                     757..759,763..765)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    928..2235
                     /gene="AGO4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1339..1341,1351..1353,1387..1398,1405..1407,
                     1429..1431,1438..1440,1450..1452,1462..1464)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1543..1545,1549..1551,1789..1791,2203..2205)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cttccaggttcagatccccaagattgatgtttatcactatgatgtagatatcaaaccagagaaacgcccccgaagagtcaacaggtggatatggaggttacacttccaggagaggggaaggaccagacatttaaggtttccattcagtgggtgtcagttgtcagccttcagatgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcactggatgtaatcacccggcaccttccctccatgaggtacacccctgtgggtcgctcctttttctcccctcctgaaggttattaccaccccctgggagggggcagggaggtctggtttggcttccaccagtcggtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcgactgctttctatcgtgcccagcctatcattgagttcatgtgcgaggtcttggacatccagaacatcagtgaacaaagcaaacctctgacagactcccagcgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggtgacccactgtggccagatgaagagaaaataccgagtttgcaatgttacccggcgaccagccagccaccagacgttccctctgcagctggagaatgggcaagccatggagtgcacagtagctcagtattttaagcagaaatacagtctgcagctgaaataccctcacctgccttgtctccaagtgggacaggagcagaagcacacatacctgccactggaggtgtgtaacatcgtggcaggccagaggtgcatcaagaagctgacagacaatcagacctcgaccatgataaaagcaacagccaggtctgctccagacaggcaggaggagatcagcagactagtgaagagtaacagtatggttggtgggcctgatccgtatctgaaggagtttggaattgttgttcataatgaaatgacagagctgacaggcagagttctgccagccccaatgctgcagtatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttgctgaagagtttcacagaccagctgcgcaagatctccaaggacgccggcatgccgatccagggccagccctgcttctgcaagtacgcccagggtgcagacagtgtggagcccatgttcaaacacttaaagctgacttatgttggcctgcagctcatcgtcgtgattctgcctgggaagacgcctgtgtacgctgaagtcaagcgggttggagatactcttctaggcatggccacacagtgtgttcaagtaaagaacgtggtcaaaacctctccacaaacgctgtccaacctgtgtctgaagatcaatgccaagctcggaggaatcaacaatgtgctggtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcccgccggggacgggaagaagccgtccatcgcggccgtggtgggcagcatggacgggcaccccagccgctactgcgccacggtgcgcgtgcagacctcgcgccaggagacctcccaggagctgctctacagccaggaggtgatccaggacctgaccaacatggtgcgggagctgttgatccagttctacaaatccactcgtttcaagcccacgaggatcatttactacagagggggagtgtcggaaggacagatgaaacaggttgcttggccagagctgatcgccatccggaaggcctgtattagtttggaagaagattatagacctggaataacctacattgttgtgcagaaaaggcatcacaccaggctgttctgtgctgacaaaactgagagggtgggtaaaagtggcaacgtaccagcaggcactactgtggacagcaccatcacacatccttctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccactaccaggtgttgtgggatgacaactgtttcacagcagacgagctgcagctgctgacgtaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcctactacgccaggctggtggcctttcgggccaggtaccatcttgtggacaaggatcacgacagcgctgagggcagccacgtgtcggggcagagcaacggccgcgatccgcaggcgctggccaaggctgtgcagatccaccacgacacccagcacaccatgtatttcgcttgagagcacctgggaagatgaggcaaaacaactacccatgcagtcctgaagtgtttggcaatctcctgctctacccagggccgggggatttcggactgcccactaccagcagctccggacagtcgcactgaatctgttcttcactgcaacgtctgatgcaccaacacaattgagccatttgtttcattgttttctgtactagaaatccatagacttgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaggccgatcatcctgaaatttttcaaggagttggcacgaaaggtttctatcaaatcttttgctagctgtggtttttttcagttctcctcatcccatgagctgacggtgactgctgctctgtctccgtgccctgcttcgtgagtatgatgtgatggcaaaatgttttatccagctcgctgtaatccttctgtcgtgtggggccataaatttttttatggagattttagacttcactactgtaaatgccttttaacaaacataactttcacaggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttaataggtggttcttgttctgtgaatgtgtaatataaccaatagtgatgcctgtcagtagattttaatgataatggttataaataatactgccatggtatcgtaacaagtactgaaccatcatttcccccctctaaaaatgataaaacaaaaaaaaaaaaatttagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaaggtttaactttggcaataaatctttgttttttaagccccccaaacagtgtaattttctagctgaggattgtgcatgagtttaaccaacattctcgtgtcgttttctgaacacacaatttggcagtttctgaaacaaattagaaaagacacatttccatgctttttttaaggattatttttaactgttttatattcactgttggtgtcctgtctagaacattttttataagcttggaaactgggtgttccgtgtaggaaaggccaacgtgtgcagttgaaatgtattgtgtggcaggcaacctgaggacttgtaccagcattttgaactgtttttttcctgggaatttgggttgcccacacaactgcatttacggcatgttgaacccgtgtgagtctcaaatgctgattctgtcctagcctagaaattagggtttttaatctgcttggcttttttcagctgcaacctgtaatccagaacagggacctggtttccctggtatattcctgtaatccatgaacgtagtaatttaagactagattccttattgtatacctgagttagtgcagattaaagcttattcctaaactgaggaggagtttaagaagcccaaggattgcactgtggtctctgatacttgtgtggggtttgctgctaagttgtctgctgtcccaaagcttaggaaccagccccctccaaatttcagcaataggaaatgctgtttccttcagtctttaagcttgtaaataaatgaaagtttacatttctaaatgctgttgttttcagttgtaccagagtacactgaacatcttcaaacagttttataacctccttaccagtactatgtctcataaattaagtttaacctcttttcatttctgttaaaaatgggactgaagtgaatcctgctcctggcatgtgccaagacaggtttagattgaaaaaaacaaaaagattcttttacattttttaactttttttttaaagaatacctcacttgtgtaataaaatcaggacatgtgggtgggagactgaccgctgcttttctcagtactcgttcagggagaagacacaaaaaccctttttagagtgaactctgactgacccaacacacacggagaaccttggcaccttgaaaagcacctgagcacctgttggaggtggtaggatccaagatccctgatttgagtttgtgcactaggaatggggctggtttaacaagggtgcataaaaaatgaactttatcaccaattagttgtccagtgccaagcactcctggttgagactgagggaagggagagcctctccttggtttgcctgtgactggatatttgacctcagaccaggtggagcatcagcccctggtgagtcctgggccagcacccgagcggggctggtgtgagcccaccccgggcacagggctggagttttggggggaaagcactgaagttcaggatccaagttgcagcagtgctgccctaggtaggtctgagcccaagtctggaggacttgaggacctgagtgagccctgtgggcctgagtgactcgttctgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttttagggtgttttgatttttgttttttgggtttttttttataaataaagcctgttggccactgtttagctctgtggtgtgaaagattttaaatgtagcaaagttcaaagagttggggaagggggtggttgatatatattaaaaaatattttaaaaaagggtggggggagggggcagaaatcctgttttccacctggttctgcttgctttgtccctgctgagttctgaagaagctctggcaatccctagttagcctgtctccagcagtctggctcttgtattgctgtgagttccccgggtgcccggagctccatccgaagggcactgcagaggtgggtgcacgggctgtgccgtgtccagcctcgcttggcccttcggatggggcagggccctggctcagagctggcatctgacagccccgacccctttgtggatgtgctgtaggagttttcttgctcaatagcgagggagtgactctgctttcattttcagaaggcagggccagagggcattggctccatcccgatcctgatccactgcaaggctctttccctgtgcactggaggaaagatcttgcactaaatatcacttacagattttcttagaccttgctattgacattttcatatttctatgtctagaggctgcaacttcaatgtaaaatgtttgcatttgttcagtttgacttctgatgtaattttttggtttctatattgttagacttgtaatgtttcaaatggtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactgtcctggggctcacagccccgtgtcgagataagatgctggtcgtgtacaattgcattgtattttttttttttttagcctgcagggatattttgtgttcatgtgtccaaaaataataataataataataaaaaaaaaattggcattctcgtgccaaatgttctgtttttcattattgctgtccaataaatgcaatgtacagagtgagcaaccaatactgttgcctgtatacaaatgtcttaaactatttaacttttaattaaaacttgtacagaatgtgtc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]