LOCUS       XM_020713691            3849 bp    mRNA    linear   VRT 15-FEB-2018
DEFINITION  PREDICTED: Oryzias latipes NRDE-2, necessary for RNA interference,
            domain containing (nrde2), transcript variant X2, mRNA.
ACCESSION   XM_020713691
VERSION     XM_020713691.1
DBLINK      BioProject: PRJNA183868
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_019880.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryzias latipes Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="22"
     gene            1..3849
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101159398"
     CDS             53..3589
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_020569350.1"
                     /db_xref="GeneID:101159398"
                     /translation="

MALFPAFSEVSENKIENSTEEFDWLKNKSFPTGDALNIQARFLKNSEGLNEREASVGRDVSSTEEKARGDRNVPPKTRKSEKKRKKKKKHKKRNGGDSSSSGTDSDTIYPSDLKKKEEDNGQHPAPLTSQFSWLDDLQSSTKQMFCVDCKPDPANWTYKSLYRGDVARYRRKGTSSLGLDCRKQEISWEDSKKKRKQKGDGGADRYFSTASRHLLRSEPSVSVKPATPDSSEGNTSTSFLPLDNPERDNREQETSERVQTSSVNPLGIYDSSTALWLQGKGRQDEQKQITQVEESAAHVAGKTEEFNRHLREHPSDTQQWLQFIQYQDELGASVFGGNEGLQGSESSECKSKSSYKAVLEKKLSIAERAVAINPTCISLQLERLRICQELWEPSVLAKEWKKLVFLHPNSAPLWRRYLLFIQSYFSNFTVSKVNSAYGKCLSTLSAVLDGSMVSHSALPGTEEDMLDLFIQQCQFLRQAGHSEKAISLFQAMMDFTFFKPDSVKKLSTRQQVEFFEPFWDSGEARVGEVEARGWKAWMLQQERGGWLPPPTEEEDKEEEDEEEVKNRSQAKWKVWLDVESLREAAHWLPWRPDKAKGQTEEDCDDPDRQVLFDDIGSSLICLSSPELRLRLLLYFLSFLGLPVASILSEVSQPSLFLENLSVLTQGKEPQRPLTSYDIPDLGVDSVGHMTTLQGKRKWVGLGRQGERFLTNMLSMLQPVLPPHHRASLTLSLLQYEKLKVLRSLHSGNKKRLHSQGKSSKRVVKRLLKEPDNRSSLILWREYAHLEWLLGNLVEARKVFSTASAMGGVKDLSGAALCELCLLWSQLELEEAAKEQSRLTDVTTSPAVCVLTKLAEGTSASFPFSQSLSPVSILKARKSYEQALAASLSDLEQSIKNSQPDTKDQEKLPEEKLRLRGLVGCYALFQYLTVGVHAAVSVYSLARENMEQLYHTLAPEKPLSSNEKANLTRAEAGNCEAGSRPQNHSYVSQLAHECEVLAVQQAALLKYHSSNSVFPLATLRQTLTSAISSWPSCALLWGIYVQVENRYHSAGRARRFFHSVTRDSGGVVPRLFAIVAEQQRKQLVDSAQRSCHYNEALPILPENGLGNRIRGLFETATKTEDGAHCPLLWRMYIHFLVSDGKVDKARAIFYKALQNVPWVKVRVCIWMRSSCSRSICRSS"

     misc_feature    485..781
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(485..508,515..520,530..535,539..541,545..589,
                     596..604,608..616,632..640,650..652,662..664,668..673,
                     680..700,722..733,752..760,764..781)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    965..1930
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

cgtcatattcgtgcgattatttactccttgacgcataatctcttgcgacatcatggctctgtttccagctttttctgaagtatcagagaataaaatagaaaattcgactgaagaatttgattggctgaagaataagagttttccaactggggatgcgctcaacattcaagctcgttttctaaagaacagcgaagggctgaatgagagggaagcaagcgttggaagggatgttagttccactgaagagaaagcgagaggagatcgaaatgttccccctaaaacgaggaaaagtgaaaagaaaaggaaaaagaagaaaaaacacaaaaagaggaatggaggggattctagcagcagtggaacggactctgacacgatataccccagtgacctaaaaaagaaagaggaggataatgggcaacatcctgctccattaacaagtcaattctcctggttggatgaccttcagtcatctacaaagcagatgttctgtgtggactgtaaacctgatccagccaactggacttacaagtctctgtacagaggcgatgtagccaggtataggaggaaagggacctcctctttgggtctggattgccggaagcaggagataagctgggaggactcgaagaaaaaaagaaagcagaaaggagatggaggagcagacagatatttttctacagcaagtcggcatctgctcaggtctgaaccatctgtttcagtgaagcctgcaactcctgacagcagtgaaggaaacacctcgacttccttcctccccctggataatcctgagagagataatagagagcaagagacaagtgagagagtgcagacgtcgtctgtaaaccctctggggatatatgactcgtccacagctctgtggttgcaaggtaaaggacggcaggacgagcagaagcagatcacacaggttgaggagagcgctgcacatgtagctgggaagactgaggaatttaaccggcatctcagagagcacccatcagatacacagcaatggctacaattcatacaataccaggatgagttgggtgcgtcagtgtttggtggcaacgaagggctacaaggcagcgaatcgtctgagtgcaaatcgaagtcatcctataaagcagtccttgagaaaaagctgagtattgcagagcgagcagtggccatcaacccgacctgcatcagtctgcagctggagaggctcaggatctgtcaggagctctgggagccctctgttctggctaaagagtggaagaaactggtgtttcttcatccaaacagtgctcctttgtggaggcggtatctgctcttcatccagagttacttcagcaacttcacagtgtctaaagtgaactcagcatatggaaaatgtctaagcacgctcagtgctgtgctagatggcagcatggtctctcactcagcccttccaggaactgaagaggacatgttggacctcttcattcagcagtgtcagttcttgcgacaggctggccactcagagaaagccatttctctgtttcaggccatgatggactttaccttcttcaagcctgacagtgtcaaaaaattgtccaccaggcagcaggttgagttctttgagcctttctgggatagtggggaagccagagttggagaggtggaggccagaggctggaaagcatggatgctccaacaagagcgagggggatggcttcccccccctacagaggaagaagataaggaggaagaagatgaagaggaggtgaaaaacaggagccaggctaaatggaaggtgtggctggatgtggagtcgttgcgtgaagcagctcactggttgccgtggagacctgacaaagccaagggtcagacggaggaggactgtgacgatcctgacagacaggtgttatttgatgacatcggctcatctctgatttgtctgtcttcaccagaactccggctccgcctcctcttatatttcttgtctttcctgggtctgcctgtagcctctattctctctgaagtctctcagcctagtttatttctggaaaatctctctgtgcttactcagggtaaggagccacagcgacctctgacctcctacgacatacctgaccttggggttgactctgtaggtcatatgacaactctccagggaaaaaggaagtgggtggggcttggaaggcagggtgagaggtttctcaccaacatgttaagcatgctgcagcctgtccttcctcctcaccacagagcttccctgactctcagcctattacaatacgaaaagctcaaagtcttgcgcagtctgcacagtggaaataaaaagcgccttcactctcaggggaagagcagcaagcgagtcgtgaaacggctcctcaaagaacctgacaaccgctcgtctctgatattgtggcgcgagtatgcccaccttgagtggctcttgggaaacctggtcgaggctcgcaaagtgttctccacagcctcagcgatggggggagtcaaagacctgagtggagcggctctgtgtgagctgtgtctcctctggtcccagcttgagctggaggaggcagcaaaggaacagagtcggcttacagatgtaaccacgtcaccagctgtctgcgtcttgaccaaactcgcagagggaacatctgcatcctttcccttctcccagtccctctctccagtttccatcctaaaggccaggaagtcctacgaacaggcgctggctgccagcttgtcagacctggaacaaagcatcaagaactctcagcctgacacaaaagaccaagaaaagcttccagaagaaaagctgaggttgagaggtctggttggctgctatgctctgttccagtacctcactgtaggcgtccatgcagccgtttcagtctacagccttgccagggagaatatggagcaactttatcacaccttagcacctgaaaagccgctcagcagcaacgagaaagccaacctgacacgcgctgaagccggcaactgtgaagccggttcccgccctcaaaaccacagttatgtcagccagttggctcatgagtgtgaggtattagcggtgcagcaggcggcattgctgaagtaccacagcagcaacagcgtgtttcctctggcaacactgagacagacactcacctcggccatctcatcctggcctagctgcgcccttttgtggggcatatatgtgcaggtggagaatcgttaccatagtgctggcagggcacgccgtttttttcactcggtaaccagagacagtggcggtgttgtaccacgcctatttgctattgtcgctgaacaacaaaggaagcagctggtggattctgctcagaggtcttgtcactacaatgaggctttgcccatactaccagaaaatggcttaggcaaccgaatccggggactttttgaaactgccaccaaaacggaggacggagctcactgccctttactgtggaggatgtacattcacttcttggtttctgatggtaaggtggataaagcccgagcgattttctataaggccctgcagaatgttccctgggtaaaggtgagggtttgtatatggatgcggtccagctgttcccggagcatctgcaggagttcatagacctgatgatggagaaagagctccgactgaggctgcctttggaagagctggatattctcctggaggactaattggacacagagatctcgttacagaaatgagctggcaacatctggaaaagcaaagatatatgttggcttaaacataaattacacatacaaagctttagtgtgaaactgtgatctacatatttgtacaaaatgctttaatgaccccttgttttaatattccagtttgacattaaatggtattgttaatca

//