2024-04-25 20:50:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020591662 1859 bp mRNA linear VRT 27-MAR-2017 DEFINITION PREDICTED: Monopterus albus vimentin (vim), mRNA. ACCESSION XM_020591662 VERSION XM_020591662.1 DBLINK BioProject: PRJNA380265 KEYWORDS RefSeq. SOURCE Monopterus albus (swamp eel) ORGANISM Monopterus albus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018127894.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Monopterus albus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1859 /organism="Monopterus albus" /mol_type="mRNA" /db_xref="taxon:43700" /chromosome="Unknown" /sex="male" /country="China" gene 1..1859 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:109955479" CDS 91..1455 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_020447318.1" /db_xref="GeneID:109955479" /translation="
MSYRSAPHSSYKKMFGGERTTVRTSSTRQFSSPVRSRVSFGLSSTPTIYAAKTHRFRSSVAMPRLASDNLDFSLSDAINSEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAEVEQLRGKGTSRVGDLYEDEMRDLRRQVDQLTNEKARVEVHRDNLADDIGRLREKLQDEISQREEAEANMQSFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQVHQQQHVQVDMEIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAAKNNDALRLAKQEANDYRRQVQSLTCEVDALKGTNESLERQMREMEENFSLETSGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSKPHIETTTGKKVLIKTIETRDGQVINESTQNHSDMEQ"
misc_feature 112..351 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 352..1281 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
cccagacgcactcagctgatgctgccggaacgagagcgcaaccaaatcggcaacgttactgtgctggttctctgaatagatacaaaaaagatgtcttataggtcagctccacattcctcttataaaaagatgtttggtggggagaggaccacggtcaggaccagctccacccgccaattctccagcccggtgcggtcccgggtatctttcggtctctcctccaccccgaccatctacgcagcgaagacccacaggtttcgtagcagcgtagccatgccccggctggcctccgacaacttggacttctcactgtccgacgccataaacagcgagttcatcacgaaccgcaccaacgagaaagcgcagatgcagtcgctcaacgaccgtttcgccaactacattgagaaggtccgtttcttggagcagcagaacaagatcctgctggcggaggtggagcagctgcggggaaaaggcacatctcgggttggagatctgtacgaggacgagatgcgggacctgaggcgccaggtggaccagctcacgaacgagaaggcccgggtggaagttcaccgggataacctggccgacgacatcggcaggctgagagagaagctgcaggatgagatatcccagcgggaggaggctgaagcaaacatgcagagcttcaggcaggacgtggacaatgctgccctcgccagactggaccttgagcgaaaggtagagtcactccaggaggagatcaacttcctcaagaagctgcatgatgaggagatgctggagctacaaaaccaggtccaccagcagcagcatgtgcaggttgacatggagatagctaaacctgaccttacagcagctctgagggacgttcgtcttcagtatgaaaacctggcctccaaaaacatccaggagtcggaggaatggtacaaatccaagtttgctgacctcactgaagctgcggccaagaataatgatgctttgagactggccaagcaggaggccaatgactatagacgccaagttcaatcacttacatgtgaggtggatgctctcaaaggaactaatgagtccttggagcgccagatgagagagatggaggagaacttctccctggagacaagcggttaccaggacaccattggccgtctggaggaggacattcacaacatgaaggacgagatggcccgtcacctccgggagtaccaggacctcctaaatgtcaagatggccctggacattgagattgccacctataggaagctgctggaaggagaggagagcagaatctccaccccactgcccaacttctcctctctaaacctgagagaaacaatgattgattccaaacctcatattgaaaccacaacaggcaaaaaggttctcatcaagacgattgagaccagggacggtcaggtgatcaatgaatcaacccagaaccacagtgacatggagcaatagtgtctttgtccttgccaaacaaccaacacaagcaatatgaacaaacacttcactggggcaacaatcaagcaaataaacaagaacacacagaaagcaaacagctttgaaaagtgcctttatatgatcattcagtcaacctgttagttgatacagactgtatttggcttccttctctgttgaaagtattactttgttacagttaatttgactcaataatgaatcagcacaacatagagatcctactgagagctacaggatcctcctttgtaaccaagctagcatttttaatcaatacagcatgcacactccaggaaatatgtatgctaaagatgtcacacttgtctgtatgcagcaataaaccctaaagactgaaactcagtgctgtgcgtgaggtgtaatacttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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