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Previous release (v1)
2025-12-09 09:59:58, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_019638724 1273 bp mRNA linear MAM 20-DEC-2016
DEFINITION PREDICTED: Hipposideros armiger homeobox B8 (HOXB8), transcript
variant X1, mRNA.
ACCESSION XM_019638724
VERSION XM_019638724.1
DBLINK BioProject: PRJNA357596
KEYWORDS RefSeq.
SOURCE Hipposideros armiger (great roundleaf bat)
ORGANISM Hipposideros armiger
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera;
Rhinolophoidea; Hipposideridae; Hipposideros.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_017731390.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Hipposideros armiger Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1273
/organism="Hipposideros armiger"
/mol_type="mRNA"
/isolate="ML-2016"
/db_xref="taxon:186990"
/chromosome="Unknown"
/sex="female"
/tissue_type="muscle"
gene 1..1273
/gene="HOXB8"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 7 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 2 samples with support for all annotated
introns"
/db_xref="GeneID:109380791"
CDS 55..786
/gene="HOXB8"
/codon_start=1
/product="homeobox protein Hox-B8 isoform X1"
/protein_id="XP_019494269.1"
/db_xref="GeneID:109380791"
/translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGSSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature 493..663
/gene="HOXB8"
/note="Region: Homeodomain; pfam00046"
/db_xref="CDD:459649"
ORIGIN
gtggcgcccccaactacagtcgccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcagcagttttcagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctatcagcagaacccgtgcgccgtggcgtgccacggggaccccggcaacttctacggctacgacccgctgcagcggcagagcctgtttggtgcgcaggatccagacctggtgcagtacgccgactgcaagctcgcggccgccagcggcctgggagaggaggccgaaggttcagagcagagcccgtcgcccacccaactcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcgacggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgagccccggaggcggcagacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggctgcggccgccctccgtccgcgggtcccccgactgcgccgccgtcgcccgcccccgcccgagagagctctggtcccgggagtcggcccggagcctggcctcccaccgctgcgtccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccgggggaaagacaaggattgtaagcaaggactccctcgcttagcgagggtgagcggctgcagcttggctgagccccccaccccccgcccccgcccagtgtaaaaagcctccttgtgcaatggtctcttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctctctctctctctctctctctctctctctc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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