LOCUS       XM_019530258            1863 bp    mRNA    linear   VRT 20-DEC-2016
DEFINITION  PREDICTED: Crocodylus porosus vimentin (VIM), mRNA.
ACCESSION   XM_019530258
VERSION     XM_019530258.1
DBLINK      BioProject: PRJNA357059
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Crocodylus porosus (Australian saltwater crocodile)
  ORGANISM  Crocodylus porosus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae;
            Crocodylus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017728886.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Crocodylus porosus Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Crocodylus porosus"
                     /mol_type="mRNA"
                     /isolate="Cpor-Errol"
                     /db_xref="taxon:8502"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="blood"
     gene            1..1863
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 31 Proteins, and 89% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:109306692"
     CDS             1..1530
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_019385803.1"
                     /db_xref="GeneID:109306692"
                     /translation="

MWLLASAPEINSNASWYSLATKVTTVYLHNVVSRIKAQHSFPYFTKAFTEHSRLDYCSTGNNSGGGGTARPGGSTRYVTSSSRYSLGSARPSGSVRLSSTPGGYATKSTSVRLRSSLPPARLLHDTVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILVAELEQLKGKGTSRLGDLYEEEMRELRRQVDELTNDKARVEVERDNLADDIMKLREKLQDEMEQREEAETTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQIQDQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLHEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGTNESLERQMREMEENFNVEAANYQDTIARLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    220..432
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    433..1359
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

atgtggcttttagcctctgctccagaaataaacagcaatgcttcatggtattctttggcaacaaaagtgactacggtatacttgcacaacgtagtatcaagaatcaaagcacagcacagtttcccttattttacaaaagcctttacagaacattccaggcttgattactgctccacagggaacaacagcggcggcggcggcactgcccggcccggcggcagcacccgctatgtcacgtcgtccagccgctactcgctgggcagcgcccggcccagcggcagcgtgcgcctctcgtccacgcccggcggctacgccaccaagagcacgtcggtgcggctgcggagcagcctgccgcccgcgcgcctgctgcacgacaccgtggacttctcgctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctggtggccgagctcgagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgcgagctgcgccgccaggtggacgagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgacgacatcatgaagctccgcgagaagttgcaagatgagatggagcagcgagaagaagctgaaactaccttgcagtctttcagacaggatgttgacaatgcatctctggcgcgtcttgacctggagcgcaaagttgagtctttgcaggaggagattgtattcttgaagaagcttcatgatgaggaaattcgggagctgcaggcccagattcaggatcaacacattcagattgatatggatgtttctaaaccagatcttactgctgccctgcgtgatgttcgtcagcagtatgaaagtgttgctgctaagaatcttcatgaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaatgatgccctccgtcaggccaagcaagaagctaatgaatatcgcagacaaatccagtccctcacctgcgaagttgatgcgcttaaaggaactaacgagtccctggagcgccagatgcgtgagatggaggagaactttaacgttgaagctgctaactaccaagacactattgcccgtctgcaagatgaaattcaaaacatgaaggaagaaatggctcgccaccttcgcgagtatcaggatctgctgaatgtcaagatggctcttgatattgagattgctacctacagaaaactgctggagggagaggagagcaggattaacatgcctattccaacttttgcttccttgaacctgagagaaactaacattgagtctcaacctatggttgatactcactcaaagaggacactcctaattaagactgttgaaaccagagatggacaggttattaatgaaacctcccagcatcatgatgatctggagtgaaaaccatgaaggaatctgcatcctaattagtgcaggaaaaattcttaccagcaagatttaaaaaagtccaagtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttttttataagagcgcaagattgtaatgctagagaataggttttagatcttgcaaactggttctccctgaaggtttagcatttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgttttttaagtatccaaatttaataaaactgctttttttcagcacagtatgagcaacctgtcgctgcatcaataaataattggaaaata

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