2024-03-29 21:08:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_019508342 1755 bp mRNA linear VRT 16-DEC-2016 DEFINITION PREDICTED: Gavialis gangeticus vimentin (VIM), mRNA. ACCESSION XM_019508342 VERSION XM_019508342.1 DBLINK BioProject: PRJNA357062 KEYWORDS RefSeq. SOURCE Gavialis gangeticus (Gharial) ORGANISM Gavialis gangeticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017729004.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gavialis gangeticus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1755 /organism="Gavialis gangeticus" /mol_type="mRNA" /isolate="Ggan-Ray" /db_xref="taxon:94835" /chromosome="Unknown" /sex="female" /tissue_type="blood" gene 1..1755 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 132 samples with support for all annotated introns" /db_xref="GeneID:109291355" CDS 17..1420 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_019363887.1" /db_xref="GeneID:109291355" /translation="
MSFATSKSSSYRRMFGSGSGSGGGGTARSSGSTRYVTSSSRYSLGSARPSGSVRLSSTPGGYATRSTSVRLRSSLPPARLLHDTVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILVAELEQLKGKGTSRLGDLYEEEMRELRRQVDELTNDKARVEVERDNLADDIMKLREKLQDEMEQREEAETTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQIQDQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLHEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGTNESLERQMREMEENFNVEAANYQDTIARLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 38..322 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 323..1249 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
cctcgacgccgcagccatgagcttcgccacgtccaagagctcctcgtaccgcaggatgttcggcagcggcagcggcagcggcggcggcggcaccgcccggtccagcggcagcacccgctatgtcacgtcgtccagccgctactcgctgggcagcgcccggcccagcggcagcgtgcgcctctcgtccacgcccggcggctacgccaccaggagcacgtcggtgcggctgcggagcagcctgccgcccgcccgcctgctgcacgacaccgtggacttctcgctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctggtggccgagctcgagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgcgagctgcgccgccaggtggacgagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgacgacatcatgaagctccgcgagaagttgcaagatgagatggagcagcgagaagaagctgaaactaccctgcagtctttccgacaggatgttgacaatgcatctctggcgcgtcttgacctggagcgcaaagttgagtccttgcaggaggagattgtattcttgaagaagcttcatgatgaggaaattcgggagctgcaggcccagattcaggatcaacacattcagattgatatggatgtttctaaaccagatcttactgctgccctgcgtgatgttcgtcagcagtatgaaagtgttgctgctaagaatcttcatgaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaatgatgccctccgtcaggccaaacaagaagctaatgaatatcgcagacaaatccagtccctcacctgcgaagttgatgcgcttaaaggaactaacgagtccctggagcgccagatgcgtgagatggaggagaactttaatgttgaagctgctaactaccaagacactattgcccgtctgcaagatgaaattcaaaacatgaaggaagaaatggctcgccaccttcgcgagtatcaggatctgctgaatgtcaagatggctcttgatattgagattgctacctacagaaaactgctggagggagaggagagcaggattaacatgcctattccaacttttgcttccttgaacctgagagaaactaacattgagtctcaacctatggttgatactcactcaaagaggacactcctaattaagactgttgaaaccagagatggacaggttattaatgaaacctcccagcatcatgatgatctggagtgaaaaccatgaaggaatctgcatcctaattagtgcaggaaaaattcttaccagcaagatttaaaaaagtccaagtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttttttttataagagcgcaagattgtaatgctagagaataggttttagatcttgcaaactggttctccctgaaggtttagcatttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgttttttaagtatccaaatttaataaaactgcttttttccagcacagtatgagcaacctgtcgctgcatcaataaataattggaaaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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