LOCUS       XM_018881650            1605 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans putative ATPase ECM3 (ECM3), partial
            mRNA.
ACCESSION   XM_018881650
VERSION     XM_018881650.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Dipodascomycetes; Dipodascales; Trichomonascaceae; Sugiyamaella.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1605)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1605)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031671).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="C"
     gene            <1..>1605
                     /gene="ECM3"
                     /locus_tag="AWJ20_4570"
                     /db_xref="GeneID:30036717"
     CDS             1..1605
                     /gene="ECM3"
                     /locus_tag="AWJ20_4570"
                     /note="Non-essential hypothetical protein; involved in
                     signal transduction and the genotoxic response; induced
                     rapidly in response to treatment with 8-methoxypsoralen
                     and UVA irradiation; relocalizes from ER to cytoplasm upon
                     DNA replication stress; ECM3 has a paralog, YNL095C, that
                     arose from the whole genome duplication; GO_component:
                     GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922];
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IEA]; GO_component: GO:0005783 - endoplasmic reticulum
                     [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 -
                     endoplasmic reticulum [Evidence IDA] [PMID 22842922];
                     GO_component: GO:0005789 - endoplasmic reticulum membrane
                     [Evidence IEA]; GO_component: GO:0016021 - integral
                     component of membrane [Evidence IEA,IEA]; GO_component:
                     GO:0016021 - integral component of membrane [Evidence ISM]
                     [PMID 12192589]; GO_component: GO:0016020 - membrane
                     [Evidence IEA]; GO_function: GO:0016887 - ATPase activity
                     [Evidence ISS] [PMID 9200815]; GO_process: GO:0008150 -
                     biological_process [Evidence ND]; GO_process: GO:0055085 -
                     transmembrane transport [Evidence IEA]"
                     /codon_start=1
                     /product="putative ATPase ECM3"
                     /protein_id="XP_018734225.1"
                     /db_xref="GeneID:30036717"
                     /translation="

MYTAIGLAFGLIVWYATPNPRKWFGGVVAAGGFNNSSDLPIAYITTLASSSLFPAGSAQQGTAYAVIFVVVFIICMFNLGGVSLIGSDFKYRVHDPEADEVTTPIISVDGVRRGARAIRSWRNRNHTIGNGDVSLQDINSTATEPTIRMGEGIEDDDYENAVASDDESGLPQRYTADHDEYEKRTHRPSRKSESSFSRVMSDPRYGESIYLRTRSDSISVAPGAATTVGYRRPARLSRLSGTAGDIRPTNSLPDASESENLQDVILSYSAVRELQTLGGTEESCSANPVSNTSTGTTTDASPLPSKNRTENESKDCESVSPNETDVQPPKPKFYSYLKVFLANFLRPISMSLFLSLAVSMAPPLRRLFYIDADNKNPDQFNIPYAPDNQPVLDFVMDFTSFVGNACVPLGLSMLGATIARLEVKQFPKGFWKSMALMSVLKLVVLPIISVLWVKKLLALNWIDEDNTMAIFVMIVTAGVPTATSQLYITAMFTPPGESHIQIDCLAAYLICQYSFLVFTLSILVTYTLKNVVSV"

     misc_feature    <1177..1452
                     /gene="ECM3"
                     /locus_tag="AWJ20_4570"
                     /note="Predicted permease, AEC (auxin efflux carrier)
                     family [General function prediction only]; Region: YfdV;
                     COG0679"
                     /db_xref="CDD:440443"
ORIGIN      

atgtatacggccatagggttggcttttggtctgatagtctggtatgcgacaccaaatcccaggaaatggttcggtggagtcgttgctgctggaggattcaataactcttcagaccttcctattgcttatatcaccactttagctagcagtagcctgtttccagctggttctgctcaacaaggcactgcctatgctgttatttttgtggttgttttcattatttgcatgttcaatcttggaggagtgtctttgattgggtcggatttcaagtatagagtacacgacccagaggccgacgaggtaacgactcctataatcagtgtggatggtgtgagaagaggagctagagctattcgtagctggagaaatagaaaccataccattggaaatggcgatgtttcattacaggatattaatagtacggcaactgagcctacaatacggatgggtgaaggtattgaagatgatgactatgaaaatgccgttgcaagcgatgatgagtctggtcttccacagagatatactgccgaccatgacgagtatgaaaagagaacacaccgaccatcgaggaaatctgagagcagttttagtagagttatgagtgatccaaggtacggagaatcgatctatttgcgtactcgctcggattccatatctgtggctcccggtgctgcaaccactgtgggttacagaagaccagctagattatcaaggctttctggtacagcaggtgacattagaccaactaatagtttacctgatgcttcggaatctgaaaacttacaagatgtcattttgtcatatagtgctgttcgagagttgcaaactttaggaggcaccgaagaatcatgctctgcgaatcccgtcagtaatacttctacaggcacaactacagatgcttcacctttgccatctaaaaatcggactgaaaatgagtcaaaagattgtgaatcggtttcaccaaacgagacagatgtgcaaccgcccaaacccaaattttacagctatttgaaggtgtttttagcgaatttcctgcgacccattagcatgtcgttatttctttcgttggctgtctcaatggctccaccgttacgaaggttgttttatatcgatgctgataacaaaaatcctgatcagttcaatattccatatgcaccagataaccagccagtcctagattttgtaatggatttcacttcattcgtcggaaacgcatgtgttccattaggactttcaatgttgggtgccaccattgcgagacttgaggtaaagcagtttcccaaaggattctggaaaagtatggcattaatgtcagtgctaaaactcgtggtgttgccaatcatttcggtcctctgggtgaaaaagttacttgctctaaattggattgacgaagataacacaatggccattttcgtgatgatagtcacggcaggagttccaaccgcaacgagccagctttatatcacggcaatgttcaccccacccggagaaagccatatccaaatagattgtctggcagcgtacctcatctgtcagtactcttttctggttttcactttaagcatacttgttacgtacacgctgaaaaacgtagtctcggtctaa

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