LOCUS       XM_018880991             939 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Rer2p (RER2), partial mRNA.
ACCESSION   XM_018880991
VERSION     XM_018880991.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Dipodascomycetes; Dipodascales; Trichomonascaceae; Sugiyamaella.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 939)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 939)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031672).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="A"
     gene            <1..>939
                     /gene="RER2"
                     /locus_tag="AWJ20_395"
                     /db_xref="GeneID:30036027"
     CDS             1..939
                     /gene="RER2"
                     /locus_tag="AWJ20_395"
                     /inference="similar to AA sequence:KEGG_Orthology:K11778"
                     /note="Cis-prenyltransferase involved in dolichol
                     synthesis; major enzyme of polyprenol synthesis in both
                     the endoplasmic reticulum (ER) and in lipid droplets;
                     participates in ER protein sorting; GO_component:
                     GO:0005783 - endoplasmic reticulum [Evidence IEA];
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IDA] [PMID 11442630]; GO_component: GO:0005783 -
                     endoplasmic reticulum [Evidence IDA] [PMID 24868093];
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IDA] [PMID 9858571]; GO_component: GO:0005789 -
                     endoplasmic reticulum membrane [Evidence IEA];
                     GO_component: GO:0005811 - lipid particle [Evidence IDA]
                     [PMID 24868093]; GO_component: GO:0016020 - membrane
                     [Evidence IEA]; GO_function: GO:0045547 - dehydrodolichyl
                     diphosphate synthase activity [Evidence IDA] [PMID
                     11442630]; GO_function: GO:0004659 - prenyltransferase
                     activity [Evidence IDA] [PMID 17345630]; GO_function:
                     GO:0004659 - prenyltransferase activity [Evidence IDA]
                     [PMID 9858571]; GO_function: GO:0016740 - transferase
                     activity [Evidence IEA]; GO_function: GO:0016765 -
                     transferase activity, transferring alkyl or aryl (other
                     than methyl) groups [Evidence IEA]; GO_process: GO:0006888
                     - ER to Golgi vesicle-mediated transport [Evidence IMP]
                     [PMID 12911815]; GO_process: GO:0019408 - dolichol
                     biosynthetic process [Evidence IDA] [PMID 10217761];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]; GO_process: GO:0006486 - protein glycosylation
                     [Evidence IDA,IMP] [PMID 9858571]"
                     /codon_start=1
                     /product="Rer2p"
                     /protein_id="XP_018734634.1"
                     /db_xref="GeneID:30036027"
                     /translation="

MNIISGFPGVEYLVKRTKTFLCHVLRTGPVPGHVAIVMDGNRRFAKKRHQETWEGHNAGFETLASVLEFCYELGVQAVTVFAFSIENFKRPAYEVDALMKIVKDKLIQVCENGDLADQYGLRIRVIGNRSLLPPDVIEVAEKAEKLTRNNTKAVLNICFPYTSRDDVTNSIRRIVTRAEKGLIDPDSIDEDTIASNMYTGSCPPLDILIRTSGVERFSDFMLWESQHYTMIEFVNILWPDFNCWHMFKAILKWGLQKGNGRYNENLLANDDSDYNLTGDDTLDYDSPSTTFVGDKDTSTDYYDNDSEETVVE"

     misc_feature    97..759
                     /gene="RER2"
                     /locus_tag="AWJ20_395"
                     /note="Cis (Z)-Isoprenyl Diphosphate Synthases; Region:
                     Cis_IPPS; cd00475"
                     /db_xref="CDD:259850"
     misc_feature    order(112..129,154..156,166..168,178..180,187..189,
                     244..246,268..270,280..282,301..306,313..315,469..471,
                     628..630,646..648,652..654)
                     /gene="RER2"
                     /locus_tag="AWJ20_395"
                     /note="active site"
                     /db_xref="CDD:259850"
     misc_feature    order(490..495,499..504,511..516,562..570,577..579,
                     610..612,643..657,664..672,679..693,697..699)
                     /gene="RER2"
                     /locus_tag="AWJ20_395"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:259850"
ORIGIN      

atgaatattatatcaggattcccaggagtcgagtacctggtcaaaaggaccaaaacgtttctgtgtcatgtgctgaggacaggaccagtgcccggtcatgtggctatagtcatggatggcaatagacggtttgccaaaaaacggcatcaggagacatgggaaggacacaacgccggttttgagacgctggcgagtgtgctggagttctgttatgagctgggtgtacaggcagttacggtatttgcattttccattgagaactttaaaagaccagcatatgaggtcgatgcattaatgaaaatcgtcaaggacaaactgatccaggtgtgtgagaatggtgaccttgccgaccagtacggactacgaattagagtcattggcaaccggtcgttactaccgccagatgtcattgaagtggctgaaaaggctgaaaagctgactcgaaacaatactaaagcagttcttaacatctgttttccatatacttcacgagacgacgtgacgaattctatacgacggatagtcacaagggctgagaaaggattaattgatcccgactcgatagacgaagacaccattgcatcaaacatgtacacaggcagctgtcctcccttggacatactaatacgaaccagcggagtcgagcggttcagcgacttcatgctgtgggagtcgcagcattacaccatgatcgagtttgtcaacatcctgtggcccgatttcaactgctggcacatgttcaaagccattctcaaatgggggctccaaaagggcaatggccgatacaacgagaacctgctcgccaacgacgactccgactacaacctcacaggcgacgacaccctcgactacgactcgccctcaaccaccttcgtcggcgacaaagacacctccaccgactattatgacaacgacagcgaggaaaccgtagtagaatag

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