LOCUS       XM_018879613            1614 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Gtb1p (GTB1), partial mRNA.
ACCESSION   XM_018879613
VERSION     XM_018879613.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Dipodascomycetes; Dipodascales; Trichomonascaceae; Sugiyamaella.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1614)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1614)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031674).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="B"
     gene            <1..>1614
                     /gene="GTB1"
                     /locus_tag="AWJ20_2656"
                     /db_xref="GeneID:30034591"
     CDS             1..1614
                     /gene="GTB1"
                     /locus_tag="AWJ20_2656"
                     /inference="similar to AA sequence:KEGG_Orthology:K08288"
                     /note="Glucosidase II beta subunit, forms a complex with
                     alpha subunit Rot2p; involved in removal of two glucose
                     residues from N-linked glycans during glycoprotein
                     biogenesis in the ER; relocalizes from ER to cytoplasm
                     upon DNA replication stress; GO_component: GO:0005783 -
                     endoplasmic reticulum [Evidence IEA,IEA]; GO_component:
                     GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID
                     14562095]; GO_component: GO:0005783 - endoplasmic
                     reticulum [Evidence IDA] [PMID 22842922]; GO_component:
                     GO:0005788 - endoplasmic reticulum lumen [Evidence IDA]
                     [PMID 16373354]; GO_component: GO:0017177 - glucosidase II
                     complex [Evidence IPI] [PMID 16373354]; GO_function:
                     GO:0004558 - alpha-glucosidase activity [Evidence IMP]
                     [PMID 16373354]; GO_function: GO:0004558 -
                     alpha-glucosidase activity [Evidence IMP] [PMID 19542522];
                     GO_process: GO:0006491 - N-glycan processing [Evidence
                     IEA]; GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IMP] [PMID 16373354]; GO_process:
                     GO:0006487 - protein N-linked glycosylation [Evidence IMP]
                     [PMID 16373354]"
                     /codon_start=1
                     /product="Gtb1p"
                     /protein_id="XP_018737513.1"
                     /db_xref="GeneID:30034591"
                     /translation="

MRVFGLSISAFTALTLASSAWGLRGLPKENESLYKPDENGNWACLGHPDIVISFDKINDDYCDCPDGSDEPGTSACAAVAPPGGGFFCENPGHFPGVLPYNRVDDGACDYDICCDGSDEKEGVCINKCQEIHDEYIKVLKSQQDALERGLQARQKLVAQAATARDEQQKEIVKKEKELKEKQTFLESRQEILDRLVETQEQDVSSGKVSKSKSPEAIEKVAIKLEDLKRSYGEFASRLQAAESDRSQLDRIFEQLKDTYNPNFNDPAVKDSIRSWEEVKSNSQLSSDASSVNLDTESLAALIQELHEYRDESSAVLERQQSIAKGGTFFKILSLFVPSSSQQLLASYLYELKVWLARQGLAAYPPMDHPGSGHQAGEYSESIEIRDARKVVENIQNEINDIQSAIETSLSDLSADYGQNDVLRALRNVCVENPVGEYDYEVCFFGQASQKGKGSNTNLGTYSSLKRESDHFVMTFENGARCWNGPIRRAQVNVYCGSVSEISTVSEPEKCEYFFKMTSPAACDPNLKVDVEITHSDL"

     misc_feature    16..498
                     /gene="GTB1"
                     /locus_tag="AWJ20_2656"
                     /note="Glucosidase II beta subunit-like; Region:
                     PRKCSH-like; pfam12999"
                     /db_xref="CDD:372423"
     misc_feature    1189..1611
                     /gene="GTB1"
                     /locus_tag="AWJ20_2656"
                     /note="Glucosidase II beta subunit-like protein; Region:
                     PRKCSH; cl06793"
                     /db_xref="CDD:414904"
ORIGIN      

atgagagtatttggtctgtcaatatcggcttttacagcgttgaccttagcatcctcggcatggggactaagaggattgcctaaggaaaacgagagtctgtataaaccagatgaaaatgggaactgggcctgtctagggcatcccgatattgttatttcatttgacaagataaatgacgattattgcgattgccctgatgggtctgacgaacctggaactagtgcatgtgctgcggttgctcctcctggtggggggtttttctgtgaaaacccgggtcatttccctggtgtgctaccctacaacagggtggatgatggtgcgtgtgattatgatatttgctgtgatggctcggatgagaaagagggcgtttgcataaataaatgtcaagaaattcatgatgaatatatcaaggtacttaaatctcagcaggatgcactggaaagaggattacaggcaagacagaaattggtagcccaggcggctaccgccagagatgagcagcaaaaagaaatcgtgaaaaaggagaaggaattaaaagaaaagcagacatttctagaatctcgccaagagatattagatcgccttgtcgagacacaggaacaggatgtttcgtctggtaaagtatcaaaaagcaaatcaccagaagcaattgaaaaagtggcaattaagctagaagacttgaaaagaagctacggcgaatttgcgtctagattacaagcagcggaatcagatagatcgcagcttgatcggattttcgaacaattgaaagatacatataaccccaatttcaacgatccggccgtcaaagatagcattcgctcttgggaggaagttaaaagtaattcacaactatcctcagatgctagctctgtgaacttggataccgaatctttagcggccttgattcaggaacttcatgaatatagagacgagtcatcagcggtattggaacggcaacagtctattgctaaaggagggactttttttaagattttgtcactgttcgttccgtcatccagtcaacaactgttggctagctatctttatgagctcaaggtatggctcgctagacaaggtctcgctgcttaccctccaatggatcacccaggtagtggccatcaagcaggagaatattcggaatccattgaaattcgagacgctcgtaaagtagttgaaaatattcaaaacgagattaacgatattcaatctgccatagaaacctcacttagcgacttatctgcagattatggtcagaacgatgtccttcgtgctttacgcaatgtttgtgttgaaaacccagtgggtgagtacgattatgaggtttgtttctttggtcaagcaagccaaaagggtaaaggctcgaacactaatctcggtacatactcgagcctaaaacgcgaatccgaccatttcgttatgacgtttgagaacggcgcaagatgttggaatggtccgatacgccgtgctcaagttaatgtatattgcggaagtgtctccgagatatccactgttagcgagccggaaaagtgcgaatatttcttcaagatgacaagccctgctgcatgcgaccccaatctgaaggttgacgttgaaattacccattcagatttataa

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