2025-04-03 20:07:03, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_018878300 2082 bp mRNA linear PLN 07-JAN-2024 DEFINITION Sugiyamaella lignohabitans bifunctional glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1 (SCT1), partial mRNA. ACCESSION XM_018878300 VERSION XM_018878300.1 DBLINK BioProject: PRJNA342695 BioSample: SAMN04417247 KEYWORDS RefSeq. SOURCE Sugiyamaella lignohabitans ORGANISM Sugiyamaella lignohabitans Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Dipodascomycetes; Dipodascales; Trichomonascaceae; Sugiyamaella. REFERENCE 1 (bases 1 to 2082) AUTHORS Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M., Marx,H. and Mattanovich,D. TITLE Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans JOURNAL Unpublished REFERENCE 2 (bases 1 to 2082) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JAN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2082) AUTHORS Peymann,A. and Graf,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_031672). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2082 /organism="Sugiyamaella lignohabitans" /mol_type="mRNA" /strain="CBS 10342" /type_material="culture from holotype of Candida lignohabitans" /db_xref="taxon:796027" /chromosome="A" gene <1..>2082 /gene="SCT1" /locus_tag="AWJ20_1421" /db_xref="GeneID:30033222" CDS 1..2082 /gene="SCT1" /locus_tag="AWJ20_1421" /inference="similar to AA sequence:KEGG_Orthology:K13507" /note="Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase; dual substrate-specific acyltransferase of the glycerolipid biosynthesis pathway; prefers 16-carbon fatty acids; similar to Gpt2p; gene is constitutively transcribed; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19525420]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IDA,IGI,IMP] [PMID 11544256]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IDA] [PMID 11544256]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IGI,IMP] [PMID 11544256]" /codon_start=1 /product="bifunctional glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1" /protein_id="XP_018735617.1" /db_xref="GeneID:30033222" /translation="
MTDKNEKAKTNSTPNPPPNWLYDLMLWIFTIIFDLFFRKILPRGAYRIPKKGAVIFVAAPHANQFVDPMMLMQQVKVSSGRRISFLVAEASTKRPFIGFMAWATNAIGVVRAQDNLVKGSGTIYMEESDPLKVLGKGTKFTQECEEAGHVGLPHGLGMNDIDKIISDTELTVRKEFKPKARDLLLKGTTYKVASRVNHSDMYHKVFRHLHDGNCLGIFPEGGSHDRPDLLPIKAGVAIMALGAIADNRDCNVKIVPCGMNYFHPHKFRSRAVIEFGEPVSVPAELVDMYLAGGDDKRKAVKSLLDDITVALKSVTITSPDYDTLMILQAARRLYLPKGKQVPLSLVVELTRRFTEGYNHYKDDPRIIHMREMVSAYNRQLSDLGIKDHQVETASLSPPTVIGKLIFRTGKLLVLLIFSLPGAILFAPVFVATKRISKKKAAEALKASSVKIAARDVLATWKLLVAMGLTPVLYTFYAFLATWLSYKYELVDRNWRSLVFVTIASYIVLPSVTFAALVIGETGMDIFKSLRPLALALNPSHKNTVAKLKQTKAQLSEEITELVNTLGPELYPDFEHDRIKQPLFRSDDRRASRRDRASSNASDWSMASSGDESAAISRVNSEFDLADIPLFSYGSSSGRTTPGSHSRTVSDTSSVEDLNDSVERATGSEAFNTEISKRIRGAMAERLSRGEHEN"
misc_feature 73..924 /gene="SCT1" /locus_tag="AWJ20_1421" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like; Region: LPLAT_AAK14816-like; cd07992" /db_xref="CDD:153254" misc_feature order(181..183,190..192,199..201,259..270,661..669) /gene="SCT1" /locus_tag="AWJ20_1421" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153254" ORIGIN
atgactgacaaaaatgaaaaggccaagacaaattcgacgccaaacccaccccccaactggttgtatgacttgatgctctggatcttcacaatcatctttgatctttttttccgaaagattcttcctcgtggagcttatcgaattcccaaaaagggtgctgtgatttttgtggctgctcctcatgcgaaccagtttgttgatcccatgatgctgatgcaacaagtaaaagtatcgtctggtagacgcatttcctttctcgttgctgaggctagtaccaagcgaccatttataggattcatggcatgggccaccaatgcaattggcgttgttcgagcccaagataaccttgtcaaaggatctggtactatttacatggaggagagtgatcctttgaaagttcttggcaaaggcacaaagttcactcaagaatgtgaagaagctggccatgttggacttccacatggacttggtatgaacgatattgataaaatcatttctgacactgaattgactgttcgcaaggagtttaagccaaaggcacgtgatcttcttcttaaaggcacaacttataaggtagccagtagagtcaaccattctgacatgtatcataaggtatttcgccatcttcacgatggaaactgcttgggaatcttccctgaaggtggctctcatgacagacctgatttgttaccaatcaaggcaggtgttgctatcatggcactgggtgctatagcggataatagagattgtaatgtgaaaatcgttccttgcggaatgaactactttcatcctcataaatttagatctcgggcagttattgaatttggtgaacctgtgagtgtgcctgctgaactggtagacatgtatttagctggtggcgacgataaaagaaaggctgttaagagtttgttggatgatattacggttgctctaaagagtgttacaattacatctcctgattatgatacactgatgattctccaagctgctcgtaggttgtacttgcccaagggtaaacaggtgcctttatcacttgttgtggagcttactagaaggtttactgaaggttataatcactacaaagatgatccaagaattattcatatgagggaaatggtttctgcctataatagacaattgagtgatcttggaattaaggatcaccaagtcgaaactgcctctttgagcccaccgactgttattggcaagttaatatttcgtactggtaaacttctcgttctcttaattttcagtttgcctggtgctatcttgtttgccccagtcttcgttgcaacaaaacgaatttcaaagaaaaaagctgctgaagctctaaaagcaagtagtgttaagattgctgctagagatgtgttggctacatggaagctacttgtggccatggggctaactcctgtattgtacaccttttatgcatttctagccacttggttatcatacaaatacgagcttgttgatagaaattggagatctcttgtttttgtcactattgcttcgtatattgtactaccgtccgtgacgtttgcagccttagtaattggtgaaactggtatggacatattcaagtctttacgaccattggcattggcacttaatcctagtcataaaaacactgttgccaaacttaaacagactaaagctcagttgagtgaagaaattacagagttagtcaatactttaggaccagagttgtatcccgatttcgagcatgatagaatcaagcaacctttgttccggtcagatgatcgtagagcatctagacgtgaccgtgccagttcaaatgcatccgactggtccatggcatcatctggcgatgagtcggcagctatctcaagagttaattcagaattcgacttggccgatattccactattcagctatggatcatcttctggacgaacaaccccaggtagtcatagtagaactgtatcagacacttcatctgttgaggacttgaacgactctgttgaaagagctactggaagtgaagcatttaacactgaaataagtaaaagaatacgcggtgccatggcagaacgactaagtcgaggtgagcacgaaaactaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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