2024-05-04 18:27:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017847249 2377 bp mRNA linear PRI 24-AUG-2016 DEFINITION PREDICTED: Rhinopithecus bieti retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_017847249 VERSION XM_017847249.1 DBLINK BioProject: PRJNA339282 KEYWORDS RefSeq. SOURCE Rhinopithecus bieti (black snub-nosed monkey) ORGANISM Rhinopithecus bieti Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016812914.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rhinopithecus bieti Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2377 /organism="Rhinopithecus bieti" /mol_type="mRNA" /isolate="Rb0" /db_xref="taxon:61621" /chromosome="Unknown" /sex="male" /tissue_type="blood" gene 1..2377 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins" /db_xref="GeneID:108512134" CDS 181..873 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_017702738.1" /db_xref="GeneID:108512134" /translation="
MPAPVDGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGTMAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(400..414,418..420,469..471,487..489,526..528, 532..537,544..549,553..561,565..570) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(406..408,415..417,535..537,544..549,556..558) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 409..567 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
gggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggtggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggatggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagctcccccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcattcgaggcctcccactacccagatgtatacagccgcgaggagctggcggccaaggtgcacctccctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgtcgccaggagcggctggagtcaggctcgggtaccatggcagccccgagacttcccgaggccccagcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggacctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcctaccttcgcagacggctttgccctggaggaggcgtccctgcgactgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcctgggccccctcctcagttcgacctgagagctggagacgtgccctggtgacagccaccaagccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtccccgccccatcctgtccccaccccatcgccacccgtcctgctggcagcagaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccggggacgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgtgagtggcggggccgctgactctgtaagatgagtctacatctctctgccgctcccactccccatcagcagagctgcccactctccaggctcccggtccccccgaaatgacaataacagcagttcctgcgagcctggtctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaaggggggctcaggcaggaagccaggtccccaaggccgcacggctaggagtgggtggagctgcctttcaggtccatcaccagctccaccatctgaggcacggcagcaggttctggagggagggtggggccctcgtgtggaggcgggctggtgctggcggtgtcgtcgtcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcccccagccctgcggaggcacggccggcgtctgctctgtccgacacagttgcattgcccaagagctctaagcaaggaggctgtcgcggggccgagaacccgctgtgactggcaagcgtggctggcccagcgcagcaggaggggccctgagccatgggatgtgacagtcttgaccagggccaccccctgggaaagaagtgcggcaccagggcaggagctgtagtagctactctcctcgtctccagcccgggctccccacatcactcccagatcaccggggcaccccatctccaggcggcacctcacacaccagtcctgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgtactcccagtgctttgggacgctgaggtgggaggattgcttgagaccagcctgggtgacatagcaagacccagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacgcttgtcatcccagtaacccgagaagctgaggcaggaggatggcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccactgcattccagcctgtgcatcagagccagaccccgactcaaaacgaataaataaaacacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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