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Previous release (v1)
2025-12-08 04:08:15, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_017774672 1101 bp mRNA linear PLN 20-JAN-2023
DEFINITION PREDICTED: Gossypium arboreum uncharacterized LOC108473113
(LOC108473113), mRNA.
ACCESSION XM_017774672
VERSION XM_017774672.2
DBLINK BioProject: PRJNA907401
KEYWORDS RefSeq.
SOURCE Gossypium arboreum
ORGANISM Gossypium arboreum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
Gossypium.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_069080) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Jan 20, 2023 this sequence version replaced XM_017774672.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_025698485.1-RS_2022_12
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1101
/organism="Gossypium arboreum"
/mol_type="mRNA"
/isolate="Shixiya-1"
/db_xref="taxon:29729"
/chromosome="11"
/tissue_type="leaf"
/genotype="A2"
gene 1..1101
/gene="LOC108473113"
/note="uncharacterized LOC108473113; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 3 long
SRA reads, 2 Proteins"
/db_xref="GeneID:108473113"
CDS 200..916
/gene="LOC108473113"
/codon_start=1
/product="uncharacterized protein LOC108473113"
/protein_id="XP_017630161.1"
/db_xref="GeneID:108473113"
/translation="
MDSFYFHNVKTEKVKAMKKYNRLQSIAKVFRIFEVLSALLFLAWTAERVPFAIKISGEFVLKLGGIIASPFFVFLICNLIIITLIAKSGIFSAVRNADSKVCEEIIIKTADTHSKSVSQEEIVYQDKEIISEVNTSTRECEDMEPELEPESDSDFEADNRRVYRRSKSEKLEREKVKKELRRSESEKKCQKIENLDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESLSIVLQSQA"
polyA_site 1101
/gene="LOC108473113"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
cgattgaaaaggaggagaaacctcactgctcttacactgcgactccaaaaccgtaccccctctctccatcctttttcaaatccggcatttattttcccggaaagttgaaaaccagtttccacggaaccaaacgaaacttttgaaactttccaaattcctatcggttttcaccgttgaatgcctcggaaacgttgctgttatggattccttttatttccataacgtgaaaacagagaaagttaaggcgatgaagaaatacaatcgtcttcaaagcatagcaaaggtgtttcgtatttttgaagtgctttcggctttgctgtttttggcgtggactgccgagcgcgtgccttttgccatcaaaatctccggcgagtttgttttgaaactcggcggcatcatcgccagtccgttcttcgttttcctcatctgtaacctcatcatcatcactctaattgctaagtccggtatcttctccgccgttcgcaatgccgattccaaagtctgcgaggaaataatcatcaagaccgcagacactcactccaaatcggtgtctcaagaagagattgtgtatcaagataaggagatcatctctgaagtgaacacatctactcgcgagtgcgaagacatggaaccagaactggagccagagtcagactctgactttgaagccgataatcggagagtgtataggagaagtaaatcggagaagttggaaagggagaaagtgaaaaaggaactacgacgatcggagagcgagaagaaatgccaaaaaattgaaaacctggacgaaaaattatttcctgaagacgatttgagcaatgaagagtttcaacgagcgatcgaagactttattgctaaacagttgaggtttcgccgagaagagtctctgtctattgttcttcaaagccaagcttgaaaaaaaagagttttctttttagaaaagtttaaccaccaaaaaaaggaaaatggctatttactggactgttttcttttttatctgtttaaaaaaaaaaaaaacgctaatagcctggttatgttatgctgtacagtggtacaacgacaatggaggaactggtaactaccatcatttttgttaacaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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