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2025-12-08 04:08:12, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_016839203            1075 bp    mRNA    linear   PLN 06-AUG-2024
DEFINITION  PREDICTED: Gossypium hirsutum uncharacterized protein
            (LOC107911353), mRNA.
ACCESSION   XM_016839203
VERSION     XM_016839203.2
DBLINK      BioProject: PRJNA713846
KEYWORDS    RefSeq.
SOURCE      Gossypium hirsutum (cotton)
  ORGANISM  Gossypium hirsutum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
            Gossypium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_053447.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 25, 2021 this sequence version replaced XM_016839203.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_007990345.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Gossypium hirsutum"
                     /mol_type="mRNA"
                     /isolate="1008001.06"
                     /db_xref="taxon:3635"
                     /chromosome="D11"
     gene            1..1075
                     /gene="LOC107911353"
                     /note="uncharacterized LOC107911353; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 60
                     long SRA reads, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:107911353"
     CDS             199..912
                     /gene="LOC107911353"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_016694692.1"
                     /db_xref="GeneID:107911353"
                     /translation="
MDSFYFHNVKTEKVKAMRKYNRLRSIAKVFRIFEVLSALLFLAWTAERVPFAVKISGKFVLKLGGIIASPFFVFLICNVIIITLIAKSGIFSVVRNADSKVCEEIIKTADTYSKSVSQEEIVYQDKEIISEVNTSTRKCEDMEPEPEPESDSDFEADNPRVYRRSKSEKLEREKVKKELRRSESEKKCRKIENMDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESLSIVLHSQA"
ORIGIN      
attgaaaagaaggaaaaacctcaatgctcttactctgcaactccaaaaccgtaccccctctctccatcctttttcaaatccgacatttattttcccgggaagttaaaaaccagtttccacagaaccaaacgaaacttttgaaactttccaaattcctatcggtttttcaccgttgaatgcctcggaaacgttgctgttatggattccttttatttccataacgtgaaaacagagaaagttaaggcgatgaggaaatacaatcgtcttcgaagcatagcaaaggtgtttcgtatttttgaagtgctttcggctttgctgtttttggcgtggactgccgagcgcgtgccttttgccgtcaaaatctccggcaagtttgtattgaaactcggcggcatcatcgccagtccgttcttcgttttcctcatctgtaacgtcatcatcatcactctaattgctaagtccggtatcttctccgtcgttcgcaatgccgattccaaagtctgcgaggaaatcatcaagaccgcagacacttactccaaatcggtgtctcaagaagagattgtgtatcaagataaggagatcatctctgaagtgaacacatctactcgcaagtgcgaagacatggaaccagaaccggagccagagtcagactctgactttgaagccgataatccgagagtgtataggagaagtaaatcggagaagttggaaagggagaaagtgaaaaaggaattacgacgatcggagagcgagaagaagtgccgaaaaattgaaaacatggacgaaaaattatttcctgaagacgatttgagcaatgaagagtttcaacgggcgatcgaagactttattgctaaacagttgaggtttcgccgagaagagtctctgtctattgttcttcatagccaagcttgaaaaaatagagttttctttttagaaaagtttaaccaccaaaaataggaaaatggctatttactggactgttttcctttttatctgttaaaaaaaaaacgctaatagcctggttatggtatgctgtacagtgatacaacgagaatggaggaactggtaactacca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]