2024-03-28 23:34:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016703810 3730 bp mRNA linear PLN 05-APR-2022 DEFINITION PREDICTED: Capsicum annuum protein argonaute 2 (LOC107858973), mRNA. ACCESSION XM_016703810 VERSION XM_016703810.2 DBLINK BioProject: PRJNA814299 KEYWORDS RefSeq. SOURCE Capsicum annuum ORGANISM Capsicum annuum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061112) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 5, 2022 this sequence version replaced XM_016703810.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Capsicum annuum Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3730 /organism="Capsicum annuum" /mol_type="mRNA" /cultivar="UCD-10X-F1" /db_xref="taxon:4072" /chromosome="2" /tissue_type="leaf" /country="USA: Davis, California" gene 1..3730 /gene="LOC107858973" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4964 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 243 samples with support for all annotated introns" /db_xref="GeneID:107858973" CDS 252..3278 /gene="LOC107858973" /codon_start=1 /product="protein argonaute 2" /protein_id="XP_016559296.1" /db_xref="GeneID:107858973" /translation="
MDRRGGGSGGRGGGNRGRGQGQGRGYYEQGQGRGGGRGGPQMGGGRGGAQTPQQWGNQPRGGSGQFRGSPYNQSAGQNYPVSQNPGRGGTWVNQPVQRGGFGTGWARPAQQQPQQEVVHRPPPPPPQSSDPVQVDLGSLSIKERNPSSPPKSNMEKRVPVARPDTGKIAVKSVRLLANHFPVRFNPQTTIMHYDVDIKQNFAGENRPVRKLINKSDLRLIREQLSADNPAQFPINKTAYDGEKNIFSAVQLPTGCFTVNCSDGDDARGRSFDVTIKFVAELKLCKLKEYLSGNLSYIPRDVLQGMELVMKENPSRCRVSVGRCFYSKEHQAEHDFGFGVAAYKGFQQSLKPTSGGLALCLDYSVLALRKPMPVLDFLRDYIGEFSENNNFGNKWQVASDALVGLKVKVIHRRASQKFLIKELTKRKTRDLTFPLVDPEGKDPPREVFLVDYFRDKYQREIRYKDLPSVELGKGDKKNQVPLELCVLVEGQRYPKEHLDKNTALFLKNISLARPLERRETICEMVRAEDGPCGAITRNFEIGVDTNMTRVTGRILPPPDLKLGGQSRLPVNDKCQWNLVGKSVVDGKALQRWALIDFSSKERNPNFRLRADEFVYRLRDRCRKLGINMDEPSIEYFGSMNELSVVGKVEDLLKDVVNEADKRGKGRLQMIICVMAAKHNGYKYLKWVSETKIGVVTQCCLSSNVNKGQDQYLANLSIKINAKLGGSNMELMERLPNFGGEDNVMFIGADVNHPAARNVTCPSIAAVVATVNWPAANRYAARVCPQEHRTEKILNFGSMCADLLKAYARLNSVKPNRIVVFRDGVSEGQFDMVLNEELVDLAKAIYDNHYQPAITLVVAQKRHHTRLFPEGGPANVPPGTVVDTIIVHPSDFDFYLCSHFGGLGTSKPTHYHVLWDENGFNSDRLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRMFQEVLMEMHSPGSTTSSYAASSSSSSSTASFEQRFYDLHPDLQNIMFFV"
misc_feature 942..1178 /gene="LOC107858973" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1206..1358 /gene="LOC107858973" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1359..1712 /gene="LOC107858973" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1500..1502,1545..1547,1593..1595,1605..1607, 1659..1661,1680..1682,1686..1688) /gene="LOC107858973" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1857..3131 /gene="LOC107858973" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2289..2291,2301..2303,2337..2348,2355..2357, 2379..2381,2388..2390,2400..2402,2412..2414) /gene="LOC107858973" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2493..2495,2499..2501,2712..2714,3102..3104) /gene="LOC107858973" /note="active site" /db_xref="CDD:240015" polyA_site 3730 /gene="LOC107858973" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tcatttccacgagaccttcaagtctttattctgtacttatccatcactttaccattttctcctttctttgtcccttctttaaaccctttttcgtcatttaacttatccttagcttctactcttttataccttacacactgtcttcactcttatttaacttgacaactagacattctgcacatcattatttctcatctttttattactcagaaaaaaattagtaaaagaattgagtgttgtaagtagaaaaaatggatcgacgtggtggaggcagcggcggcagaggtggaggtaaccgtggtcgtggacaaggacaaggacgtggttactatgaacagggacaaggccgtggtggaggtaggggtgggccccagatgggtggtggaagaggtggggcccagactccacagcaatgggggaaccagccaagggggggatctggtcagtttcgtggatctccgtacaatcagtccgcaggtcaaaactatccagttagtcagaatccgggtcgtggtggtacttgggtcaaccagcctgtccaacgtggcggcttcggtactggttgggccaggccagcacaacagcagcctcagcaggaggttgtgcatcggcctcctcctcctcctcctcagtcgtctgatcctgttcaagttgatctggggtccctgagtattaaggaacggaatccatcatctcctccaaaaagtaacatggaaaagcgtgtacctgttgctcgacctgatactggaaaaattgctgttaagtcagttagactgcttgctaatcattttcctgttagatttaatccccagactaccataatgcattatgatgtggatattaaacaaaactttgctggcgagaatcggcctgtgaggaagttaataaacaagtctgatctgcgtttgataagagaacagttgtctgcggataatcctgctcagtttcccattaataaaactgcatatgatggtgagaagaacattttcagtgctgttcaactccctactggctgtttcactgtgaattgctctgatggggatgatgctaggggacgttcatttgacgttaccatcaagtttgttgctgaattaaaactttgcaagctgaaagagtatttgagtggaaacctgtcctatattcctcgtgatgtactacaaggaatggaattggttatgaaagaaaatccttccaggtgcagggtgtctgtaggtcgttgtttctactctaaggagcaccaggctgaacatgattttggctttggggttgctgcatataaaggtttccagcagagcctaaagcctacatctggagggcttgcattgtgtttagattactcagttttggcactcaggaaacctatgccagtgctagactttctgagggattatattggagaattttccgaaaataataatttcggaaacaaatggcaagttgcaagtgatgcattggttggtttgaaagtcaaagtaattcatcgtcgtgccagtcagaagtttcttattaaggagctaactaaacgaaagactcgtgatcttacttttccccttgtagatccagaaggaaaagatcccccaagggaagtttttcttgttgactacttcagggataaatatcagcgggagattaggtacaaagatttaccttcagtagagcttggaaaaggtgataagaagaaccaggtcccgttggaattgtgtgtattggtcgagggacaacggtatcctaaggagcatttggataaaaacacagccttgtttttgaagaacatatcgctagctcgacccctagagagaagggagacaatatgtgaaatggtacgggctgaagatgggccgtgcggggctatcacccgtaattttgagattggagttgatacgaacatgacccgtgttacgggccgtattcttcctccccctgatttgaagttaggcggtcaaagtcgacttcctgtgaatgataaatgtcaatggaaccttgttgggaaatctgtggtggacggcaaggcgcttcagcgatgggcattgatagattttagctccaaagaacgcaaccccaactttaggctacgagctgatgaatttgtctatagattgagagatcggtgcagaaagttggggatcaatatggatgaaccttccatagaatattttggcagcatgaatgaactctctgtcgttggtaaggttgaggatctcctaaaagatgtggttaatgaagctgacaagagaggtaaggggcgacttcaaatgattatttgtgttatggcagcaaagcacaatggatacaaatatcttaagtgggtctctgagaccaaaattggcgttgtaacccagtgttgcttgtcttctaatgtcaacaagggacaggatcaatatcttgcaaacctcagtatcaagattaatgcaaaacttggaggcagcaatatggaacttatggaaagacttcctaattttggtggtgaagacaatgtcatgttcattggagctgatgttaatcatcctgctgcaaggaatgtgacatgtccttccatagcagctgttgttgccactgtcaactggccagctgctaatagatatgccgctagagtttgtcctcaggagcacaggactgagaagattctgaattttggaagcatgtgtgctgacctacttaaggcttatgctcgactcaactcggttaaaccgaacaggattgttgttttccgtgatggtgtgagtgagggtcaatttgatatggtactcaatgaagagctggttgatttggcaaaggctatatacgacaatcactatcaaccagcaatcactcttgttgtggctcagaagagacaccatacacgactatttcccgagggcggtcctgcgaatgtgcctccgggtactgttgtggacacgataattgttcatccatctgattttgacttctatctttgcagccactttggagggttgggtaccagcaagccaactcactaccatgttctatgggatgagaacggtttcaattctgatcgattacaaaagcttatatacaacatgtgcttcactttcgcgcggtgcactaaacctgtttcgcttgttccaccagtttattatgcagaccttgttgcctacaggggacggatgttccaagaggtgcttatggagatgcactctccggggtctacaacttcatcctatgctgcttcatcatcatcatcttcatcaactgcctcattcgaacaaagattttatgatttgcaccctgatctgcagaacataatgttttttgtttgatgacagctaccatcgtgttgtgcctgattgcaggcacctttctgtctgagatgacaaacccctaagctttttggtctccttcaccattctcagactgggaaggagatggttgtctacattttggagatgcccatttccaaacgcatttgaacctcctttctgtcgaaccttgcaaaggagtttgtgcgtgaatctaatgggatttcatgctgcttttatttctgccgtgtcttttattttctatggtactcactttcagaggtgtgagttctggggagtgagtttgtccattgtggtgttaatggtttgacgtttgattatgtttttttactttggtctctggaggtcactgccaagtttgtctgtactctgtgtttatattgtgtgatgtgttttattatgtattctgagacagcagttgaatttcatttaatgtatttgtgtttgtgcta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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