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2024-03-28 23:34:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016703810            3730 bp    mRNA    linear   PLN 05-APR-2022
DEFINITION  PREDICTED: Capsicum annuum protein argonaute 2 (LOC107858973),
            mRNA.
ACCESSION   XM_016703810
VERSION     XM_016703810.2
DBLINK      BioProject: PRJNA814299
KEYWORDS    RefSeq.
SOURCE      Capsicum annuum
  ORGANISM  Capsicum annuum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Capsiceae; Capsicum.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_061112) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_016703810.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Capsicum annuum Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Capsicum annuum"
                     /mol_type="mRNA"
                     /cultivar="UCD-10X-F1"
                     /db_xref="taxon:4072"
                     /chromosome="2"
                     /tissue_type="leaf"
                     /country="USA: Davis, California"
     gene            1..3730
                     /gene="LOC107858973"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4964 long SRA reads, 8 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 243 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:107858973"
     CDS             252..3278
                     /gene="LOC107858973"
                     /codon_start=1
                     /product="protein argonaute 2"
                     /protein_id="XP_016559296.1"
                     /db_xref="GeneID:107858973"
                     /translation="
MDRRGGGSGGRGGGNRGRGQGQGRGYYEQGQGRGGGRGGPQMGGGRGGAQTPQQWGNQPRGGSGQFRGSPYNQSAGQNYPVSQNPGRGGTWVNQPVQRGGFGTGWARPAQQQPQQEVVHRPPPPPPQSSDPVQVDLGSLSIKERNPSSPPKSNMEKRVPVARPDTGKIAVKSVRLLANHFPVRFNPQTTIMHYDVDIKQNFAGENRPVRKLINKSDLRLIREQLSADNPAQFPINKTAYDGEKNIFSAVQLPTGCFTVNCSDGDDARGRSFDVTIKFVAELKLCKLKEYLSGNLSYIPRDVLQGMELVMKENPSRCRVSVGRCFYSKEHQAEHDFGFGVAAYKGFQQSLKPTSGGLALCLDYSVLALRKPMPVLDFLRDYIGEFSENNNFGNKWQVASDALVGLKVKVIHRRASQKFLIKELTKRKTRDLTFPLVDPEGKDPPREVFLVDYFRDKYQREIRYKDLPSVELGKGDKKNQVPLELCVLVEGQRYPKEHLDKNTALFLKNISLARPLERRETICEMVRAEDGPCGAITRNFEIGVDTNMTRVTGRILPPPDLKLGGQSRLPVNDKCQWNLVGKSVVDGKALQRWALIDFSSKERNPNFRLRADEFVYRLRDRCRKLGINMDEPSIEYFGSMNELSVVGKVEDLLKDVVNEADKRGKGRLQMIICVMAAKHNGYKYLKWVSETKIGVVTQCCLSSNVNKGQDQYLANLSIKINAKLGGSNMELMERLPNFGGEDNVMFIGADVNHPAARNVTCPSIAAVVATVNWPAANRYAARVCPQEHRTEKILNFGSMCADLLKAYARLNSVKPNRIVVFRDGVSEGQFDMVLNEELVDLAKAIYDNHYQPAITLVVAQKRHHTRLFPEGGPANVPPGTVVDTIIVHPSDFDFYLCSHFGGLGTSKPTHYHVLWDENGFNSDRLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRMFQEVLMEMHSPGSTTSSYAASSSSSSSTASFEQRFYDLHPDLQNIMFFV"
     misc_feature    942..1178
                     /gene="LOC107858973"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1206..1358
                     /gene="LOC107858973"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1359..1712
                     /gene="LOC107858973"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1500..1502,1545..1547,1593..1595,1605..1607,
                     1659..1661,1680..1682,1686..1688)
                     /gene="LOC107858973"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1857..3131
                     /gene="LOC107858973"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2289..2291,2301..2303,2337..2348,2355..2357,
                     2379..2381,2388..2390,2400..2402,2412..2414)
                     /gene="LOC107858973"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2493..2495,2499..2501,2712..2714,3102..3104)
                     /gene="LOC107858973"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      3730
                     /gene="LOC107858973"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tcatttccacgagaccttcaagtctttattctgtacttatccatcactttaccattttctcctttctttgtcccttctttaaaccctttttcgtcatttaacttatccttagcttctactcttttataccttacacactgtcttcactcttatttaacttgacaactagacattctgcacatcattatttctcatctttttattactcagaaaaaaattagtaaaagaattgagtgttgtaagtagaaaaaatggatcgacgtggtggaggcagcggcggcagaggtggaggtaaccgtggtcgtggacaaggacaaggacgtggttactatgaacagggacaaggccgtggtggaggtaggggtgggccccagatgggtggtggaagaggtggggcccagactccacagcaatgggggaaccagccaagggggggatctggtcagtttcgtggatctccgtacaatcagtccgcaggtcaaaactatccagttagtcagaatccgggtcgtggtggtacttgggtcaaccagcctgtccaacgtggcggcttcggtactggttgggccaggccagcacaacagcagcctcagcaggaggttgtgcatcggcctcctcctcctcctcctcagtcgtctgatcctgttcaagttgatctggggtccctgagtattaaggaacggaatccatcatctcctccaaaaagtaacatggaaaagcgtgtacctgttgctcgacctgatactggaaaaattgctgttaagtcagttagactgcttgctaatcattttcctgttagatttaatccccagactaccataatgcattatgatgtggatattaaacaaaactttgctggcgagaatcggcctgtgaggaagttaataaacaagtctgatctgcgtttgataagagaacagttgtctgcggataatcctgctcagtttcccattaataaaactgcatatgatggtgagaagaacattttcagtgctgttcaactccctactggctgtttcactgtgaattgctctgatggggatgatgctaggggacgttcatttgacgttaccatcaagtttgttgctgaattaaaactttgcaagctgaaagagtatttgagtggaaacctgtcctatattcctcgtgatgtactacaaggaatggaattggttatgaaagaaaatccttccaggtgcagggtgtctgtaggtcgttgtttctactctaaggagcaccaggctgaacatgattttggctttggggttgctgcatataaaggtttccagcagagcctaaagcctacatctggagggcttgcattgtgtttagattactcagttttggcactcaggaaacctatgccagtgctagactttctgagggattatattggagaattttccgaaaataataatttcggaaacaaatggcaagttgcaagtgatgcattggttggtttgaaagtcaaagtaattcatcgtcgtgccagtcagaagtttcttattaaggagctaactaaacgaaagactcgtgatcttacttttccccttgtagatccagaaggaaaagatcccccaagggaagtttttcttgttgactacttcagggataaatatcagcgggagattaggtacaaagatttaccttcagtagagcttggaaaaggtgataagaagaaccaggtcccgttggaattgtgtgtattggtcgagggacaacggtatcctaaggagcatttggataaaaacacagccttgtttttgaagaacatatcgctagctcgacccctagagagaagggagacaatatgtgaaatggtacgggctgaagatgggccgtgcggggctatcacccgtaattttgagattggagttgatacgaacatgacccgtgttacgggccgtattcttcctccccctgatttgaagttaggcggtcaaagtcgacttcctgtgaatgataaatgtcaatggaaccttgttgggaaatctgtggtggacggcaaggcgcttcagcgatgggcattgatagattttagctccaaagaacgcaaccccaactttaggctacgagctgatgaatttgtctatagattgagagatcggtgcagaaagttggggatcaatatggatgaaccttccatagaatattttggcagcatgaatgaactctctgtcgttggtaaggttgaggatctcctaaaagatgtggttaatgaagctgacaagagaggtaaggggcgacttcaaatgattatttgtgttatggcagcaaagcacaatggatacaaatatcttaagtgggtctctgagaccaaaattggcgttgtaacccagtgttgcttgtcttctaatgtcaacaagggacaggatcaatatcttgcaaacctcagtatcaagattaatgcaaaacttggaggcagcaatatggaacttatggaaagacttcctaattttggtggtgaagacaatgtcatgttcattggagctgatgttaatcatcctgctgcaaggaatgtgacatgtccttccatagcagctgttgttgccactgtcaactggccagctgctaatagatatgccgctagagtttgtcctcaggagcacaggactgagaagattctgaattttggaagcatgtgtgctgacctacttaaggcttatgctcgactcaactcggttaaaccgaacaggattgttgttttccgtgatggtgtgagtgagggtcaatttgatatggtactcaatgaagagctggttgatttggcaaaggctatatacgacaatcactatcaaccagcaatcactcttgttgtggctcagaagagacaccatacacgactatttcccgagggcggtcctgcgaatgtgcctccgggtactgttgtggacacgataattgttcatccatctgattttgacttctatctttgcagccactttggagggttgggtaccagcaagccaactcactaccatgttctatgggatgagaacggtttcaattctgatcgattacaaaagcttatatacaacatgtgcttcactttcgcgcggtgcactaaacctgtttcgcttgttccaccagtttattatgcagaccttgttgcctacaggggacggatgttccaagaggtgcttatggagatgcactctccggggtctacaacttcatcctatgctgcttcatcatcatcatcttcatcaactgcctcattcgaacaaagattttatgatttgcaccctgatctgcagaacataatgttttttgtttgatgacagctaccatcgtgttgtgcctgattgcaggcacctttctgtctgagatgacaaacccctaagctttttggtctccttcaccattctcagactgggaaggagatggttgtctacattttggagatgcccatttccaaacgcatttgaacctcctttctgtcgaaccttgcaaaggagtttgtgcgtgaatctaatgggatttcatgctgcttttatttctgccgtgtcttttattttctatggtactcactttcagaggtgtgagttctggggagtgagtttgtccattgtggtgttaatggtttgacgtttgattatgtttttttactttggtctctggaggtcactgccaagtttgtctgtactctgtgtttatattgtgtgatgtgttttattatgtattctgagacagcagttgaatttcatttaatgtatttgtgtttgtgcta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]