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2024-03-29 00:44:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016442125            3795 bp    mRNA    linear   VRT 03-MAY-2016
DEFINITION  PREDICTED: Sinocyclocheilus anshuiensis NRDE-2, necessary for RNA
            interference, domain containing (nrde2), transcript variant X3,
            mRNA.
ACCESSION   XM_016442125
VERSION     XM_016442125.1
DBLINK      BioProject: PRJNA319338
KEYWORDS    RefSeq.
SOURCE      Sinocyclocheilus anshuiensis
  ORGANISM  Sinocyclocheilus anshuiensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015548239.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sinocyclocheilus anshuiensis
                                           Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Sinocyclocheilus anshuiensis"
                     /mol_type="mRNA"
                     /isolate="Anshui"
                     /db_xref="taxon:1608454"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="China: Lingyun, Guangxi"
                     /collection_date="2012-08-20"
                     /note="cave-restricted"
     gene            1..3795
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107654848"
     CDS             238..3708
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_016297611.1"
                     /db_xref="GeneID:107654848"
                     /translation="
MALFPSCAELSGNNSSTGDRAPADLEWLSNQSFSKQDALKTHQRATERVQAEAEEPAGTREQKCKEREDSHGRSNKRKKEKKKKQKKKKSRDNSESGGSESDTVYPSDLLKKENADREEAQVRVSETFMWLDDLQTPSDSPFCIDRRADRANWEYKSLYRGDIARYKRKGGSCLGLDFRMQAVNWNDGGPEKKRVDKKPERYFCPSTRQLLRSDSLPALPVLSEGIAVSSDSYIKLSACTVEQGSSTQAPVSWVNPLGIYDRGTSLWLEGKGQPEVKGDQQDVEAQRSSSTLLSARVEEFNRKLRENPTDTQLWLDFIHFQDELAFGSGSFSAASDTDNDGDMKKMSLRAVLEKKLSIVDRAVESNPANVDLKLEKLHLCKELWEPATLQKEWKKLVFIHPNSAPLWRKYLLFTQSLFSTFSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVCLFQALLDFTFFKPDSVKDLPTRQQVDFFEPFWDSGEPRVGERGARGWKAWMLQQERGGWVIPSEPDDDDEEEQDDSEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDCEDPDRQVLFDDIGPSMIRVDRPDLQLQLILSFLQFLGLPGPSGKFSTTSSSNILLDNLTFLEEGPDPERPLTSYDLPMAGICAVGHMTFLSDCRRQAGLCKAGEEFLQNVLQQTLQLISAQDQAAITLCWLQYEKLKVLRCLRSGNKRQLKSQGKRSKRLVKRLLKEPDNRSSLALWREYAHLEWLLGNLEEARKVFDTALGMGVTRGLNDPVLCNLCFLYAQLEVEQALNSGTVPTSKAVYILTKLAEGAAYTPFSGQINPVTILKARKAYEQALLSFLPEQSTGSNARAPKKLHRMSSLVGCFGLFQYLTMGIDAADAVYNQAIQKLISWNLNSEVTDGSLRRPKVFADWESVAVQHVSLLRHHANTSVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFFHSVAKKTDSVVPYLFAITAEQRLKQMLDSVQRSRLPREALPTLPNNGLSNRIRCLFENATATEHGAHCPLLWRMYLNFMVCDGNAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTEKELRLRVPMEEVDILLED"
     misc_feature    658..945
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(658..684,691..696,706..711,715..717,721..765,
                     772..780,784..792,814..822,832..837,841..846,853..873,
                     892..903,922..945)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1132..2139
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
tacgttagacctgcaatgcgtcaagccattgcgctcagtgtgtcccggatcacgcagcactggaaccggcgggccaacaagcccttcggttagacaggacagggctgattaaatttctctcccgggatcagctctcatattatagactcaccgtgagactccttcacatccacaaagctaaggtcgcaggcggatgacgtacccggcgcgcgtctgttttgatctgtgtgaagtaacatggctcttttcccgtcctgcgctgaactgtcaggcaataacagctctactggggatagagctccagcagatctggaatggctgagtaatcagagcttcagcaaacaagatgctttgaagactcatcagcgggccacagagagagtgcaagcagaggcagaagaaccagcaggcacaagagagcagaagtgtaaagagagagaagatagccatggcagatcgaataagagaaagaaagaaaagaagaaaaaacagaagaagaagaagagcagagataactcggagagcggtggatctgaatcagacacagtttaccccagcgacctgctaaaaaaggagaacgctgacagagaggaagctcaagttcgggtgagcgagacctttatgtggctggatgacctccagaccccctctgactcccccttctgtattgacagaagagctgaccgtgccaactgggaatacaaatccctctataggggagacatagccaggtataagaggaagggaggctcttgcctggggttagacttcaggatgcaggctgtgaactggaatgatggaggtccagagaagaagcgagtggacaagaaacccgagcgctatttctgtccttccacccgtcagttgctccggtcagatagtctgcctgctttgcctgtactctctgagggcattgctgtcagctctgattcctacatcaagctctcagcctgcactgtagagcagggctcttccacccaggcacccgtatcatgggtaaatccgctgggcatctatgaccgtggaacctctttatggctggagggcaagggtcaaccggaggtcaagggagatcagcaggatgttgaggctcaaaggagcagcagcacccttctgagtgcacgggtggaagagtttaacaggaagctacgggagaatcctacggacacccagctgtggctggactttatacacttccaggatgaactggcctttggttctgggtcattctctgctgccagtgacactgacaatgatggtgacatgaagaagatgtctcttcgtgccgtgctggagaagaagctgtccattgtggacagggcagtggaaagtaaccctgccaacgtagacctgaaactggagaaactccacctgtgcaaggaactatgggagcctgccaccctgcagaaagagtggaagaaactagtgttcatccatccaaacagcgcccctttatggaggaagtatcttctcttcacacagagtcttttcagcactttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacgctcagtgcagtccaagatggcagcatggtgtctcaccctccacttccaggcacccaggaagacctcttagatatctttctacagcagtgccatttcctgcggcaggcgggtcacacagagaaagctgtgtgtctcttccaagcccttctggacttcactttcttcaagccagacagcgtgaaagacctgcccactagacaacaggtggatttttttgagcctttttgggacagtggagagcccagggttggggaacggggggctcggggatggaaggcttggatgcttcagcaggagagaggaggatgggtgattccatctgagccagatgatgatgatgaagaagagcaggatgactccgagatcaaagacaagacctggcctaagtggaagatctggttggatgtggaggcgtcccgagaggcaaaccactggttgccatggagaccagataaaaccaagggccaatcagaagaggactgtgaggaccccgacaggcaggtcttgtttgatgatattggcccatctatgattcgtgtggacagaccagatcttcagctacagttgatcctgtccttcctgcagttcctaggtctgcctggaccttcagggaagttctctacaacatcttcctcaaacattctactggacaatctaaccttccttgaggagggcccagacccggagcgaccattgacctcttatgacctcccgatggctgggatctgtgcagtgggtcacatgacatttctgagtgactgcaggaggcaggcagggctgtgtaaggcaggggaggagtttctccagaacgttctacagcaaactctccaactcatctccgcacaggatcaagctgctattactctctgctggctgcagtatgagaaactaaaggtactgagatgtttacgcagtggaaataaaaggcaactgaagtctcaggggaagcgtagtaaacggctagtgaaacgactgctaaaagagccagataacaggagcagcctggcactctggagagagtatgcccatctggagtggcttctgggtaatctggaagaggcacgcaaagtatttgacactgccttgggcatgggcgtgactagaggtcttaatgatcctgttctctgtaatctctgttttctctatgcccagttagaggtagagcaggccttaaacagtgggacagtccccacttccaaagctgtctacattctcactaaattagctgagggtgctgcctacactcctttctctggccaaatcaacccagtgaccatactgaaggccagaaaggcctatgagcaggccctattgagctttttacctgagcagagcacaggcagcaatgctagagctccaaagaaactccacagaatgtccagcctggttggatgttttgggctttttcagtacctcacaatggggatagatgcagctgatgctgtgtacaatcaggccatccaaaaactgatttcctggaacttgaattcagaagtgacagatggatctctgaggagacccaaggtctttgcagactgggagtctgttgctgtccagcatgtatcactgctgcgccaccacgccaacaccagtgtgtttcctctctcccggctaagactggcacttacagatgccctctccttactgccctccagtgcctcattatggcaactctaccttcaaacagagaaccgctatcacagcgcaggccgtgcccgcaggtttttccacagtgtggcaaagaaaactgacagtgttgtgccatatctttttgccattactgcagagcaacgactcaaacagatgctggactctgttcagaggtctcgtcttcctagagaagccctgcccaccctgccaaataatggtcttagcaaccgtatccgctgtctgtttgaaaatgctacggcaacagaacatggggcccattgtcctctgctgtggagaatgtatctgaacttcatggtatgtgatgggaatgcagagaggggcagtggaatcttctacaaggccctacaggcagtgccctgggtaaagggcttgtacatggacgcagtgcagctgtttcctgaacgtgtgcaagagtttttagaccttatgactgagaaagagttgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactagccatcaaaacccttcccataacacactaaaaatcaataaccactgcccaataaccaacagaaacgaaacagtctctctgaacaacag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]