2024-04-19 14:48:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016303792 4781 bp mRNA linear VRT 20-APR-2016 DEFINITION PREDICTED: Ficedula albicollis argonaute 3, RISC catalytic component (AGO3), mRNA. ACCESSION XM_016303792 VERSION XM_016303792.1 DBLINK BioProject: PRJNA208061 KEYWORDS RefSeq. SOURCE Ficedula albicollis (Collared flycatcher) ORGANISM Ficedula albicollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_021694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ficedula albicollis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4781 /organism="Ficedula albicollis" /mol_type="mRNA" /isolate="OC2" /db_xref="taxon:59894" /chromosome="23" /sex="male" /country="Sweden: Oland" /collection_date="2009" gene 1..4781 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101809823" CDS 25..2562 /gene="AGO3" /codon_start=1 /product="protein argonaute-3" /protein_id="XP_016159278.1" /db_xref="GeneID:101809823" /translation="
MVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNRDVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 196..480 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 508..660 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 661..1023 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(817..819,862..864,904..906,916..918,970..972, 991..993,997..999) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1156..2433 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1567..1569,1579..1581,1615..1626,1633..1635, 1657..1659,1666..1668,1678..1680,1690..1692) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1771..1773,1777..1779,1987..1989,2401..2403) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
cccgtgggggcacagcccctgctcatggtgcccagacgtcccggctatggcaccatgggcaaacccattaaactgctggccaactgcttccaagttgaaatcccaaagattgatgtctacctctatgaggtggatatcaaaccagataagtgtcctcggagggtgaacagggacgtggtggactctatggtgcagcattttaaagtgacaatatttggggaccgtagaccagtttatgatgggaaaagaagcctctatacagccaatccacttcctgtggccactactggggtggatttggatgtgacactacccggagaaggtggaaaagatcgtcccttcaaagtgtcaataaagtttgtttctcgggtgagctggcacttgctgcatgaagttttgacaggaagaaccttgcctgagcctctggaactagacaaacctatcagcactaaccctgttcatgctgtcgatgtggtgctacgacacctcccctccatgaagtacacccctgtgggccgctccttcttctcagctccagaaggctatgaccaccccctgggagggggcagggaggtctggtttgggttccatcagtcagtccgacctgccatgtggaaaatgatgctcaacatcgatgtttctgccactgccttctacaaagcacaacccgtaattcagttcatgtgtgaagtccttgacattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctaaaggtagaagtgactcactgtgggacaatgagaaggaagtaccgtgtctgtaacgtaacgaggcggcctgcaagtcatcaaacctttcctttacagctagaaaatggccagactgtggagaggacagtagcacagtatttcagagagaaatacaacctccagctgaagtaccctcaccttccttgtctgcaagtgggacaggaacaaaaacacacctacctgcctttagaagtgtgtaacattgtggctggccagaggtgcatcaagaagctcacagacaatcagacatcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggaaatcagcagattggtgagaagtgcaaattatgatgcagatccatttgtccaagagttccagttcaaggtgagggatgagatggcccatgtgacaggacgtgtgctcccagccccgatgctgcagtacggaggacggaatcgaaccgtggcaacaccaagccatggtgtgtgggacatgcgagggaaacagttccacactggggtggagatcaagatgtgggccatagcttgctttgcaacacagagacagtgcagagaagaaattctgaagggtttcacagaccagctgcgcaagatctccaaggacgccgggatgccgatccagggccagccctgcttctgcaagtatgcccagggtgcagacagtgtggagcccatgttccgacacctcaagaacacctattcagggctgcagctcatcattgtcatcctgccagggaagacacctgtgtatgcggaggtgaagcgagtgggagatacactgttgggaatggccacacagtgtgttcaggtcaagaacgtcattaaaacatctccacagaccctctcaaatctgtgcctgaagattaacgttaaactaggaggaatcaacaacatccttgtacctcatcaaagaccttctgtgttccagcagccagtgatctttttgggagctgatgtcactcaccctccagctggagatggaaagaagccttccattgctgctgttgtaggcagcatggatgctcaccccagccggtactgtgccacggtgagggtccagcggccccggcaggagatcatccaggacctggcctccatggtcagggagctgctcatccagttctacaaatcaacacggttcaagcccacccggatcatcttctacagggacggggtctctgagggacagttccgacaggttttgtattatgagctgctggccattagagaagcctgcatcagtttggagaaggattaccagcctggaataacctacattgtggtgcagaagcgacatcatacacgactgttctgtgctgacagaacagaaagggttggacgaagtggcaatattccagctgggacaactgtagacacagacattacacacccctacgagtttgatttttacctctgtagccatgctggaatacagggaaccagccgtccctcccactaccacgtgctgtgggatgacaactgcttcacagcagacgagctgcagctgctgacgtaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcctactacgctcacctggtggcattcagagcacgctaccacctcgtggacaaggaacacgacagtgctgaagggagccacgtgtcaggacagagcaacgggcgagacccacaggccctggcgaaggctgtacagattcaccaagacaccttacgcacgatgtacttcgcttaagtcaatgacccgggagacactcaccgagaggagaactcagaacttaagccacatacaatgtatgtttccagggggttggtttaggggctgtgcctcccatcgtgctggagctgacgctgtgcaggggcgagaggctcacccttaaattgacatgaggaagattgtttacttcatccaggaacacagcactattatgcaatatgaaaccagccaactgcttttttgaggcgggctcccgtgggaagtaccgccatcattttttttttttaattattatttctcgtagtttaaccctcttctgcctttacctcaagttgctcggcagcacaactattgttgcaaaaaaaaatagtaataataaactaaaatctattgtgtaatttaaaacagaaaacaaaccaccttttaggaacaatcacagtgattgtttggagaagggaagtgtgcaaaaaagaaaataagtttttaatccccgtgcattgaggaatctttctctgtgttgccatcgagcattcgaatgtgaacatatccaagtgcattggaatgtacagcactagctaggaaacagtgagggggggaagatgttttgcacactagtccaataatttgaacctaatttagccaatggctgcctttgtgtcttttctcacagctttggagttctcagctccaagagttccctttcaaaagcaatccaagaagctcgtggttcatgtgcaggcagtagtgacccaactcttcttgctccctgggggaatttactaaagctgctgttttacctagtccaaaagtttcaattttttcctatctggcaagtcaaatctgttgaagcttcacgtgagatccaatgtcccaggttttctgggatgacatacagtaaccaccagaactgaaactttagagctaaggtctttttggaaaaaaaagaaacctgctactttacttgctgcctctcacaccttaatgtgattcatatgtatgtgtgtttgaagtttagcttccttttgtttcttttatatttattagagtaataataatgctttaatttaattattacagaacatatggtcaacatcaacttttattttttagaaatgtaatcatgtttatttttaaaaaaagaaactgacaacttgttttgctatcttttagtgcaataagcattctaaagaaaaactgtgtccattgagctgtactgaagcagtgtctgtaccacggactgtgggagaatggacacctccaggattttaaaaggacaaagtaaaagccttaattttgaaaggaaagttttatagtcagaaggaatcttgaattttccttttttaaatcaaaaaaatatacaaaaaatgcttctagacttctgcaagctttacttgtcgctgcagtcttttgatttaacaaaggaattggccttatttttggctttgaaatgtggaacatatttgaattaaatggaaagggttttgtattaagatctcagtttttacatgcttaattaaacctatttgacatcagtaaaatgtctggaattaataaaagtttttaggcttttttcctctttgatagtgactttccttttaaaattaagttattggtaacttcatttcactttgcaaataaagagggctgggatagttctaacatgttaaatcaccgaaatgtgaaacaaaccaattggactctttcattccactttaaaaccaatgtttaagatgtcagagacgagcatttattcaatgaggggactggggagttttgcactttgtaaactcgtgaactgcatttttgactgtttttatttgcactggttcatagtatatttactgcagctgtttgtatgggcattgctgtgatcccagccctcccgacctccacctgctctcacatgaaaacctggttggtctcagtagcttctctcctcgttctcaccaaatccgctgtttgccaatatactgtattttgagcctaaaatctgagcccattttgcttcaccaggcatgaacccccttttttctgccagaaaaaccaagtactgtattttgtgcgtttgtatattgtatggaaatgtccgtagtgctgttcacaacactgtctgcaagagctttactaacagctggtgtagatacctattttatctctcaaaatcgaggaaaatcatgtagaagactaacttggcaaagctaaaattgcactggaaacagtggtgggggtgggcatgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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