2024-05-02 18:38:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016196190 5033 bp mRNA linear MAM 11-APR-2016 DEFINITION PREDICTED: Miniopterus natalensis testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_016196190 VERSION XM_016196190.1 DBLINK BioProject: PRJNA317472 KEYWORDS RefSeq; includes ab initio. SOURCE Miniopterus natalensis ORGANISM Miniopterus natalensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Miniopterinae; Miniopterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015504229.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Miniopterus natalensis Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..5033 /organism="Miniopterus natalensis" /mol_type="mRNA" /isolate="MN2012-01" /db_xref="taxon:291302" /chromosome="Unknown" /sex="male" /tissue_type="skeletal muscle" /dev_stage="adult" /country="South Africa" /collection_date="Oct-2012" gene 1..5033 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107524315" CDS 1..4959 /gene="TOPAZ1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_016051676.1" /db_xref="GeneID:107524315" /translation="
MRRPLPSGTTTSGGREGAARGLRKRGRRPGTSEVGVGGPEARGPEESRRKRRMVARAAEREEVESDKSAKEKRKVTEASSDDPQPGADLVRKESLTSSESFQTVECSEFQSTALLQSLGKEVLVDGIKRRIRIKTLESLESSPFKITENKATQNIKVEFQDELYKNTPKYSCNSLSPGVENNSVLKLHDCSCFPHSKDCNDENNLTCNSDGGCIHVSENSSEFKKGSLRSLSDKRDTSNIPQLSKTEENFMGVNKLLLEESDLYQRKNNGLLPCLQNEKNTYSVEESGAGRKPRKRVKVSETDEVVTGMNFSNAHNKSELLLQENKMGAEDKEAETSKVLRKVNHNTLSPVHHLSSLPETVGKKTSPEHHINTMFQKTLEPLLKEETKNASEPKEWKSTEPEEYFKSVKSLKVKSPSDCHAVEERSQGDLRNEAEEPKFSCRRAIPMMGKRTWPCYSCARVSAHCWKKASLPKSNYCLPGPGESFRQDDFLKHQTNQTDLTDSKLSLQSSTKERNSESSSKEKLDSNVNCLSSVSEIVSAVEPTLTVMKEPMIDDEKMTSKELSKSESEVVSNTTEETRLPNVTQNLIGSKKKDRGTLTKLNLTVASQHGQEPNNPTGKTIPRKACTAKPTLVVPDLVKILNTGRLTNFKIPLLKNKTEKRREINAKSSDREAYSPLELLDNISGAEIRQNRNKENVSTVISGPQSLNIQNVTTVQASSDSYCNKNFYSISSSFLKQGNNNKPSNYISEPGNIVSNKKAVPLTVENNTLFYDPGCTEKSPAFCSEQETFKQVSSEVSGRKTTKNFSDIKIIPDILKAYEDDVLLIDVIQDDPDLFGISTEGELSFTSEVPVISQEPNVAEEHQSADSKHMELPEKKPSDNLRELPVLDPGLMKSEICTSLPAANEIKYDFKDVNISLGEVNRTSQNEKLGDFIEHIKNSDLDEKCKFSDKVTVKEEKENMHEVCKSKDSKNAEITLGECQLATLGPKPLCLSLPPLNNPSAVQEDTLVKPWMNDTRFPGQHCVLKLQNPETSEIFKREKIVRVFQKSLGLMIPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAVNMFMEYYRKFPPGVHFDLQVLNDLLNSLLKHCLLKEVFQVLNLSIMVNTLPALKILLEIFEYVATMKLRSAVPALIDIFCKLVEAGMVLDPEHCNYIVKLLHQVQASKQEITAVLEMKSRLQMRQFKKNWTCDLDSALNEIENCKEKGDWTKLGNLYLKVKMDCEKFADFQRFCTCVAETLTKGYKEERPSVPFCEFAETVSKDPQNSEVDKTLLGRIGISAMYFYHKLLQWSKGRKVLDMLYELKIHFTSLKGLTGPEKLAPRCQIVNVAVEIFLKSGSLDGAMWVLRESEWIIDTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGISSSVAEFMISKSIPIDFSSLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLRIPSYLSEIEMLLAIEIFLVSNASSIQSPGTPTQTLQIVLKRCEENKSRSKDDYQAAVERLMMAARLSDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNNH"
misc_feature 3739..4266 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
atgcggcggccactgccctcgggcaccacgacgtccggtgggcgtgaaggcgctgccagaggcctgaggaagcgaggccgtcggccggggaccagcgaggtgggagtcggcggccccgaagcccgggggcctgaggagagcaggcggaagaggagaatggtggcccgggcggctgagagagaagaggtggaaagtgacaagtcggccaaggaaaaaagaaaagttactgaagcctcgagtgatgatccacagccaggggctgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggagtgcagtgaatttcaaagtacagctctcttgcagtctttgggtaaggaagttttggtagacggtattaaaagaagaattcgaattaaaacacttgaaagcttagaaagttcacctttcaaaataactgaaaataaggctacacaaaatataaaggttgaattccaagatgaactgtacaagaatactccgaaatattcttgtaacagcttgtcacctggagtagaaaataattctgttttaaagttacatgattgcagttgtttcccccattccaaggattgtaatgatgaaaataaccttacatgtaattctgatggtggatgtattcatgtatcagaaaattcctcagagttcaagaaaggaagccttaggagcctttcagataaaagggacacaagtaatattcctcagctttcaaaaactgaagaaaacttcatgggagtaaataaattactgcttgaagaaagtgatttataccaaagaaaaaataatggcttgcttccctgccttcaaaatgagaaaaatacatactccgtagaggagagcggtgctgggagaaaacccaggaagagggtgaaggtgtctgaaacagatgaggtggttactgggatgaacttctctaatgcgcataacaagtctgagttgctgttacaagaaaacaaaatgggtgctgaagataaagaagcagaaacttcaaaagtcttgagaaaagtaaaccataatacactctctccagtgcatcacttatcaagtcttccagaaacagtaggaaaaaagacaagtcctgagcatcatataaatactatgtttcagaaaaccctagagccacttttgaaagaagaaaccaagaatgcttcagagcccaaagaatggaaaagcacagaaccagaagaatattttaagtcagtgaaaagcttgaaagtgaaatcgcctagtgactgccatgctgttgaagagagatctcagggagacctaagaaatgaagcggaagaacctaagttcagctgtcgccgagcaataccaatgatgggtaaaagaacttggccttgttattcatgtgctagagtatctgctcactgttggaaaaaggcttccttgccaaaatcaaattactgtcttcctgggcctggggaaagctttaggcaagatgactttcttaaacaccaaacaaatcaaactgacttaactgactccaaattatcattacaaagttccacaaaagaaagaaacagtgaatcttcaagtaaagaaaaattggactctaatgtaaattgtttatcttcagtctctgaaatagtctctgctgtagaacctactctaactgttatgaaggaacccatgatcgatgatgaaaagatgacgtccaaggaactgagcaaaagtgagtcagaggtagtttctaatacgactgaagaaactcggttacctaatgtgactcaaaacttaataggaagtaagaaaaaagatagaggaactctaacaaaacttaatttgaccgtggcttcccagcatggccaggaacctaataaccctacaggcaaaactattcctcgaaaagcatgtactgctaagccaacacttgtggttccagacttggttaaaatattgaacacgggacggctgactaactttaaaattcctttacttaagaataaaacagaaaaaagaagagaaataaatgccaagtcttcagacagagaagcatatagtcccctagagcttcttgacaatatatctggagcagagataagacagaataggaataaagaaaacgtctccacagtaatttcaggacctcaatctttaaacatacaaaatgtcactacagtgcaagctagttctgactcatactgcaataagaatttctatagtatctcttcaagttttttaaagcaaggtaataataacaagccatctaactacatctctgaaccaggcaatattgtttccaataagaaagctgttcctctcacagttgaaaataatacacttttttatgatcctggatgtacagagaaaagccctgccttctgctctgaacaagaaacattcaaacaagtttcctctgaagttagtggtaggaaaacgactaagaacttttcggacattaaaattattccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggaatctccaccgaaggggagctctcatttacttcagaggtccctgtgataagccaggaacccaatgttgctgaagagcaccaatcagcagattccaagcacatggaacttcccgaaaaaaaaccaagtgataacttgagagaacttcctgtattggatcctggattgatgaagtcagagatctgtacttccttgccagcagcaaatgagataaaatatgattttaaagatgtaaacatttccttaggagaagttaataggacctctcaaaatgaaaaactgggagacttcattgaacacataaaaaattcagacttggatgaaaagtgtaaattttcagacaaagtgactgttaaagaagaaaaggaaaatatgcatgaagtttgcaaaagcaaagattctaaaaatgcagagattacgcttggtgaatgtcaattagcaacactgggccccaaacctctgtgcttatcgctaccacctttgaataatccaagtgctgttcaagaagacacactagtaaagccatggatgaatgataccagatttccaggacagcattgtgtcctaaagttgcagaatcctgagacctctgaaatatttaagagggaaaagattgtaagggtgtttcagaagtccctagggttgatgataccccatagatactgcaaatttcattttaatacattacgtggctgtgagcgatcacagtgcaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctacaacgtgcagtaaacatgtttatggagtactacagaaagtttcctcctggtgtacactttgatttacaagtgctaaatgaccttctgaattctttactcaaacattgcttattaaaagaagtatttcaggtattgaacctcagcataatggttaacacgctgcctgctctgaaaatactactagaaatatttgagtacgtggcaactatgaaattaaggagtgctgtacctgctttaattgatatcttttgcaagcttgttgaagctgggatggtgcttgacccagaacactgtaactatattgttaagctcttacaccaggtacaggcttccaaacaagaaataactgcagttctggaaatgaaatccaggttacaaatgaggcagtttaaaaagaactggacctgtgatttagattcagccttgaatgaaatagagaactgtaaagaaaaaggtgactggaccaaattgggaaatttataccttaaggtaaaaatggactgtgaaaaatttgcagatttccagagattctgtacttgtgttgctgaaacactaacaaaaggctataaagaggagagaccaagtgtcccattttgtgaatttgctgaaacagttagcaaagatccacaaaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagatatgctctatgaattaaaaatacattttacaagtttaaaaggacttacagggcctgagaagttagcaccaagatgtcaaattgtgaatgttgcagtagaaatttttctaaaaagtggaagcctagatggtgccatgtgggtattaagagagtcagagtggataatcgatacaccactatggccttgtgatagactggatgtactcaatcgacacaatctgctctgtacaattgcacatgaaatcttagcgaagagcctttacagacagacatttgaagttttgcaaaatctaccaggttttcaaaactctcaagaaactgtggaggtctcacagtacagccttctttttaataaacttctagatgcctgtatagaaagcaacagtcttggtatttcatcctctgtagcagaattcatgatttcaaagagcatccctattgatttttcctctcttagaagattaattacttctttaggaaggagttgtttatggctcaaagcgagagctcactacaaaagtgctctttcattgggttgctatccaccattagagggaaatttatatcgaaaactcctacggattccgtcttatttatctgagattgaaatgcttttagctatcgaaatcttcctggtatctaatgctagtagtattcagagtcctggtactcctacacagacacttcagatagttttgaaaagatgtgaagaaaacaaatcccggagcaaggatgattaccaagctgcagtggaaagattaatgatggctgctcgtttatcggatcccaagctttttgttaagcacatgaccgtcaatgttaataaggaacaggtctatagtttggaacattgttctgccctgaaatggttgaaagagaacatgaagtgggctggaaaggtttggcttttcaataaccattagttaatacttttttttaagttcaagtaatcactgttgaaaataagataataaaaataaagacggttttcactata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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