2024-04-25 03:54:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015998658 6963 bp mRNA linear ROD 03-JUL-2021 DEFINITION PREDICTED: Peromyscus maniculatus bairdii argonaute RISC component 1 (Ago1), transcript variant X3, mRNA. ACCESSION XM_015998658 VERSION XM_015998658.2 DBLINK BioProject: PRJNA738144 KEYWORDS RefSeq. SOURCE Peromyscus maniculatus bairdii (prairie deer mouse) ORGANISM Peromyscus maniculatus bairdii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_056009.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 3, 2021 this sequence version replaced XM_015998658.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Peromyscus maniculatus bairdii Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6963 /organism="Peromyscus maniculatus bairdii" /mol_type="mRNA" /isolate="BW" /sub_species="bairdii" /db_xref="taxon:230844" /chromosome="2" /sex="female" /tissue_type="liver" /dev_stage="adult" gene 1..6963 /gene="Ago1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:102918379" CDS 166..2295 /gene="Ago1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_015854144.1" /db_xref="GeneID:102918379" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 232..384 /gene="Ago1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 385..747 /gene="Ago1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(541..543,586..588,628..630,640..642,694..696, 715..717,721..723) /gene="Ago1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 880..2166 /gene="Ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1300..1302,1312..1314,1348..1359,1366..1368, 1390..1392,1399..1401,1411..1413,1423..1425) /gene="Ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1504..1506,1510..1512,1720..1722,2134..2136) /gene="Ago1" /note="active site" /db_xref="CDD:240015" polyA_site 6963 /gene="Ago1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gaatttttaaggtctccatcaagtggctagccattgtgagctggcgtatgctgcatgaagccctggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatctatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctctgccactgccttctacaaagcacagccagtgattgagttcatgtgtgaggtcctggacatcaggaacatagatgagcaacccaagcccctcacggattcccagcgtgttcgctttaccaaggagatcaaaggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgctagtcatcagacgttccccttgcagctggagagtggacagaccgtggagtgcaccgtggcacagtatttcaagcagaaatataaccttcagctgaagtacccccacctgccctgcctacaagtcgggcaagaacagaagcatacctatttgcccctggaggtctgtaacatcgtggccgggcagcggtgcattaagaagttgactgacaaccagacctcaaccatgataaaggccacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggagtttgggatcaaagtgaaggacgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacgcccaaccaaggagtctgggacatgcgtgggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgccgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggtcagccttgtttctgcaagtacgcacaaggtgcagacagcgtggagcccatgttccgacatctcaagaacacctactcgggactgcagctcatcattgtcatcctgccggggaagacgcctgtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggcaacacagtgtgtgcaagtgaagaatgtggttaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaactcggtggcattaacaacatcctcgtcccacaccagcgctctgctgtttttcaacagccagtgattttcctgggagcagatgttacacaccccccagctggggacgggaagaagccgtctatcacagcggtggtcggcagtatggacgcacaccccagccgctactgtgctaccgtgcgtgtgcagcgcccccggcaggagatcattgaagacttgtcctatatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcccacccgaatcatcttctaccgagatggggtccctgagggccagctcccccagatccttcactatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttacattgtggtgcagaaacgccatcacacccgccttttctgtgctgacaagaatgagcgaattgggaagagtggaaacatccctgctgggaccacggtcgacaccaacatcacccacccgttcgagtttgacttctatctgtgcagccatgcaggcatccagggtaccagccgaccatcccattattatgtcctgtgggatgacaaccggttcacagcagatgaactccagatcttgacataccagctgtgccacacttacgtacgatgcacacgctctgtctctatcccagcacctgcctactacgcccgcttggtggctttccgggcacgataccacctggtagacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgagacccccaggccctggccaaagctgtgcaggttcaccaggatactctacgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaagcaaggaagagggaggtggggtcgggaggcgtataggagaccttgtttctatctacagaggggatctaagggtgggaagaggaccagcaagacagactaccagccagaaatctgatagcaacctcatgtcctcccccgcctccccatcgtgttacatctgaccccactggaccaaaaggggcagcattagtgcccaccatacacacagttgtctcgtgtgcctcacagtgctacagactcatgcttgacagcttgctagggtcgcctctgcagtcctgtggtcaaatgctggtatgtttgggtttgataattctagatgagaaagtgaggggcttgagaaagcgggtgggaggagggaaggaatttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaatgaaaacagactcagatcaatattttaggatactagatgttttcatgggttcagaatccagtttgtagggagatttttaatgctaatggtttgggttgctcctccccagctgccaccccccaccccccaattattcctctccatattttctaccccatatgcctcttccctgacagacatccggcccccagtaacacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttcctcccgccggctggtgggtaacagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttgtgggacggggtgtgggggggagaggaggtcgggagggagggaagaaatatcccaacgccagcaagcctccagctagaatgccagctgtctttcatttgaaggaattgacttccatattcattgagcttttaaaaaaaggtcacaacctcaagatggttaaaatccattgacatttgcactttcagacgtgacaagtctccgagctgctgagatgactggcccttggccttcccctttcgctccctcttttccgtggccccacccccaccctgccaggtctagagttactgtggtagcgtttctcacgcttggcttcttttccccctgatgatcaagtctcttttgtttcaatatttcttaactggggtgtctcataacacaagatctttaggactaaaataagaaaacagaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctctcatactggatgagtttgcatcccagaaacatggagccatgagaagggactgtggccctgacttgtcttctggcctggctaagtaggggtggttggctccctggggcggggctcagcctctgccctccctctctgcagacagtacctccactgctccaccctgtactctctcctggaagtgaatccccctgtctctcactggactgtccttcgatcctttgactaacggaggttccagcatgtcctctggacaggctggagaattttgctgctccctattgcttctgtttacacaaatgaatttttcctgtttcccactagggcatgtgagtgggtggcataggcttttcttttccttcccctctctcgagatactggggttcagctgtcttgcaggactggaaaagaagtgggttctagctttgtccttgctgaccttgaagcaaggtgccctctttccttgactgtccttctttccttcctgcactactgcttgggatgcggaatttgaactttggtgtacagagtccccttctaaggagcctgagtgccctactctggtgatgaagccatgatattttagatctagcccaggcttagaggccagctggagaaaggaaggtctgaatcctggcctgtggagtccaaacctctctccagtcgcccttgtacagacccagatttgctatgcaaacagtccaggttcagttgtggctggctacgtggtttagtaactacccaaaaggtagcacaaacattccttgtggaaaaagcccaggactgttgagtagttcctcctgtacttttttttctgctggctacagtatggagtgccccatgggcacagtcccagccgaagaacagaacagagggctctgggaagaggcagctcactggagagtctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatacggtctacttcttgttccgtcacccttaggggagggagctctccacagacgtgtgctgtcaactggggtacattagggggcttggatgagggcactattcctggagggtccaatcattcaccagcatttgcagatgcccatagggaacaggtgactgtcacaactccagcaacacgtttttgttctctccttttttctttgcctcactctctccagttgggtttcaagctagggattggaaagcagttttagtcctttggtatttatgtgccattcaagaaataaaagcaagagaatactgggcatgatggcccatgtctgtaattctataatcccagcaataaggctgaagcagaagattcgcaagttcagggtcagcctgggctgctcagtgaattccaggccagggtgcactacatagcaaaaccatgtctcagaaaaaaataaaaaggaaaatcgagaaaagtaacgtgagtaatacaacttcttgctgtgattaaaaagcaaaacaaaacaagtccttcagatttcactgctccggaccatgtgggttctcctcattcagaggcggtgtgcacgcagtaaaagtggtgttgccgcgcggctcagctcgtttgggtttggtttgagtggagcgtggtgccaagctccacggaggcacttggaggagtcagtccaccttcaccttcgatctctttctcctttccctcacccctctgttggcttcccttttccctttctggctttccctggcttcctttttccctcttcactcagcttgcttgctggctggcctgcctgcctgtctgcctgtgtgataatgaattctctgcatggctgcaacgatcccactgttagttggcaaggtcaggctttgctcattgactacagaagaccaaaaacctgtttctcatgcccagggtgttaaccctgggtcgcactgtcctccagcttacagtaggtcagaccagcaggcctgtctaaccgacaaaatcagtagggtttctggcagtttcaacacctctcccttctgtggaaccgattcctctcttgtttctagcactgctgctttttctcactacctggggcctctctgctgagaatgtcctacttgggtattaaagaatagccggctagaggatggatttagaagaagagagtgaaaagagaatggagagagtggattagaagtggtaaaggagagcgctgctttgtattcagtccagtgtgaacatcaggtgctagtgctggccacctgggataggcctggagctactgtgattgggaacgtccgcttgggatatgactacagtcgaacataacgaacctaaaagtatggaactactctaaagatctagttctcaactgcatcatagtttctctatggcctcctctttggctgagcagcaatgtttttggacagttttcttttttaaccagaattgtgggaatgatgccagggacacggttttctttgctggcccatggaatgtctacaaggctgctcaacgttgtagacctggcatcaggcatcacaaaggaggatgacgtttcttccctttcagggtagaagagtcacctctcacctagccaaaaggcagttttggaaatttatgtcaggaaaggttttgttttattttctaattacctgggctttggataacccaggatggtagttaagatgccttccttgggcgggggtcatggcagggatatgcaaggcagtctttgctacttggccttctaagcagactgggaaagaggggttctctggttttctctttctccccacttactaggacttgccttctccctgagccaggagagaggctgggttggtgctctccccttactctgctcctactgacttagaacctctggctgctgtacgatagcccaggaaagggaatggaaagaatgggctcaaaacaaaacagaataatgtaaggaaggcagatttccttccttcaaaagggaaatcagaaagtctccaagaattgtgtaagtaaagacaatgtgtctcaatgcactgagtcctctggtgtcatagcaataaggaagaatgaaatgacttcctgtgcacacagtccagcctgattggtgtgtggtgttgcacttagcggccatgtggtgggcatgtgtgactactctgggtttcactttattttctaaactttttattcctctcgagtccagcatggatggggaagtccctcgagccccacggctgtacttgtttgcgatgttccccattgagacttgtgtttgtgtcctgctttgagctgtaccttgtcccgtccattgtgaaattaccccagcagctgtaatgtacagttccttctcaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttttatttctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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