2024-04-20 03:49:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015896084 2854 bp mRNA linear INV 14-MAR-2016 DEFINITION PREDICTED: Acropora digitifera protein argonaute-2-like (LOC107331491), transcript variant X4, mRNA. ACCESSION XM_015896084 VERSION XM_015896084.1 DBLINK BioProject: PRJNA314803 KEYWORDS RefSeq. SOURCE Acropora digitifera ORGANISM Acropora digitifera Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015441086.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Acropora digitifera Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2854 /organism="Acropora digitifera" /mol_type="mRNA" /db_xref="taxon:70779" /chromosome="Unknown" /country="Japan:Okinawa, Kunigami, Oku" gene 1..2854 /gene="LOC107331491" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:107331491" CDS 116..2404 /gene="LOC107331491" /codon_start=1 /product="protein argonaute-2-like isoform X4" /protein_id="XP_015751570.1" /db_xref="GeneID:107331491" /translation="
MARKSKGRGNRARGRGNNEQDRQQSQKGRSENGAAAVVSDLDEKRKLDEEKGEETLWETAGPSERTNTSRSQQSAYTALSTEVKSEEVNAIPSARSQDERSGLSELSLRSSTDPFVKPAENTEEYIGEGCEVKFGFYQSVRPSQWKVMLVNIDVSSKGFSKSQPVTEFVCETLGLRDLEDRRIKIDREKLKKAISGFRIETTHMAKMRRKYTVWGMSNQSAEKLQFEIIDEASKRTTKTTVAGYFLDTYGIELRYPHLPCLQVGRKRDCYLPMEVCTTIPCQKRHLSEQQTSNMIKSTAHPAPERQKDIQLWAQKMITGSEGYLKDQFQTSIDPPPLLKLGPQDKALTPRDGSWDLSNQALLKGALVDMWALVCLAPCNEDPLRNFCHQMSSVSNREGMKMTAKPACIKYGERHEEVERLFFDCLEQFPALQLIMVVLPGNDKKLYSEVKRVGDSVIGIPTQCVQVKFVEQAKPQVCANILLKINAKLGGTNHVIDDSFKSAISKDTIVFGADVTHPSPTENGIPSIAAVVASMDYHASKYHARARVQRQRNGGGAQEIIIDLAEIVKELLIEFIKTNGFRKPSKILFYRDGVSEGQFDQVLVHEVRAVQEACMKLEKDYRPSITFVVLQKRHHTRLFSGKASNVPSGTAVDSGIRHPYEFDFYLCSHHGIQGTSRPTHYNVLYDDNNFTADSLKQLTYQLCHVSARCTRSVSMPAPAYYAHLAASRARIHVTNGNSEFVDLEKCARAIQVNDKMKSAMYFT"
misc_feature 458..592 /gene="LOC107331491" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 599..946 /gene="LOC107331491" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(746..748,791..793,836..838,848..850,902..904, 920..922,926..928) /gene="LOC107331491" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1115..2308 /gene="LOC107331491" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1451..1453,1463..1465,1499..1510,1541..1543, 1550..1552,1562..1564,1574..1576) /gene="LOC107331491" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1652..1654,1658..1660,1886..1888,2279..2281) /gene="LOC107331491" /note="active site" /db_xref="CDD:240015" ORIGIN
tcaacgggagtggaagtttttgcgttcaactgataagagtttacacagaattgataagtatttacctaggttttcaaactatccttcgcaaagtacacactccattgttataaaaatggcaaggaaatcgaagggaagaggtaatcgtgccagagggagaggaaacaacgagcaagatcgtcagcaatcgcagaagggaagaagcgagaacggcgcagctgccgtagtttcggatcttgacgaaaaacgaaaattagacgaagagaaaggcgaagaaacactctgggaaacagctggtccaagcgaacgaacaaataccagtcgaagccagcaatctgcctacactgcactttctacagaagtgaagtctgaagaagtgaatgcaatcccttcagcacgatcgcaagatgagaggtcaggcctgagtgaactgtctctcagatcaagtacagatccttttgtaaaaccagctgagaatacagaggaatatataggggaaggctgtgaggtgaagtttggtttctaccaaagtgttcgcccttcacaatggaaagtcatgctggtgaacattgatgtgtcttcaaagggatttagtaaaagtcaacctgtaacagaatttgtgtgtgaaacactgggtctgcgggatcttgaagacagaagaattaaaattgacagagagaaactcaagaaagctataagtggttttcgtatagaaacaacacatatggcaaaaatgaggaggaagtacacagtttggggaatgtccaaccaatctgctgaaaaattacaatttgaaattatagacgaggcatcaaagcgtactaccaaaacaactgtagccgggtactttcttgacacatacggaatagaattaagatatcctcatctaccctgtctccaagttggccggaaaagagattgttacctccccatggaggtctgtactaccattccttgtcaaaagaggcacttgtctgaacaacaaacctcaaatatgatcaagagtacggcacaccctgctccagagcgacagaaggacattcaactttgggctcaaaaaatgataacaggaagtgaagggtacttgaaagatcagtttcagacaagcatagacccacctcccctactgaagcttggtcctcaagataaagcactgaccccgcgtgatggctcttgggacctgagcaatcaagccctcttaaaaggcgcattagtcgatatgtgggcgttggtctgtttggctccttgcaatgaggatccactaagaaacttttgtcatcaaatgtccagtgtgtcaaatcgagaaggaatgaaaatgactgcaaagccagcctgtattaaatatggagaaaggcatgaagaagttgagcgattgttctttgactgtttggagcaatttccagcgcttcaactcatcatggttgtcctcccgggaaacgataaaaaactctactcagaagtgaaacgcgttggcgatagcgtaatcggcattcctacacagtgcgtacaggtgaaatttgtggagcaggccaaacctcaagtgtgtgctaacatcttgcttaagatcaatgccaagctcggaggaaccaatcacgtcattgatgattcgtttaaatcagcgatcagcaaagatactatcgtgtttggcgccgatgtgacccacccctcccctacagaaaatggcatcccttctattgctgctgtggtggcaagcatggattatcatgcctcgaaatatcacgcccgcgcccgtgtgcagaggcaaaggaatggcggaggtgcacaagagattatcattgacctggcagagattgtaaaagagctcctaatcgaatttatcaaaactaatgggttccgtaagccgtctaagatcttgttttaccgtgatggtgtcagcgaggggcagtttgatcaagttcttgttcacgaagtgcgcgctgtgcaagaagcttgtatgaagcttgagaaggactatcgaccgagcatcacgtttgtcgttctacagaaacgacatcacactagattgttttctggtaaagcaagtaatgtaccatcaggaacagccgtggacagtggaattaggcatccgtatgaattcgatttctatttgtgtagccaccacggaattcagggaacaagtcgaccaactcattataatgtcttatatgacgacaataacttcactgctgacagcttgaagcagctcacttaccagctgtgtcacgtatctgccaggtgtacgcggagtgtttctatgccagcccccgcgtattacgctcatttggcagcttcccgggcacgcatccacgtgaccaacggaaactcagaatttgttgatttggaaaagtgtgcaagggccattcaagtcaatgacaaaatgaaaagtgccatgtacttcacctgaatagaaaagttaaagattccttggatgggctggaaacaagttaattcacatcttcaacaaattgaaggcaactttttatgtgtctgtccttatattaagcattgagcgataaaaaaaaaaaagaaaaacactaaaatctacgaaaagctccaaatgctatcaattgtcttcaaacttgcgcaataacaattgtcgcacgctcattggttactggtgacagatgtcgaaattccataaagttacgccactctattatgtaaattaaatttttgtgtctgtcctcttgttgatgctaaaaagaagtcaatcaacgctagagaaacttttgttcttctaattttcactgttaaaattagtcaggaaaatcagttttaagaacacttgcctttcagtgatgtgacctgggttcgattcaggacccaacgtcatatttgagtcaagattttgagt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]