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2024-03-28 23:30:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015806367            4595 bp    mRNA    linear   INV 02-MAR-2016
DEFINITION  Leptomonas pyrrhocoris RNA Interference Factor 5 mRNA.
ACCESSION   XM_015806367
VERSION     XM_015806367.1
DBLINK      BioProject: PRJNA313437
            BioSample: SAMN03702862
KEYWORDS    RefSeq.
SOURCE      Leptomonas pyrrhocoris
  ORGANISM  Leptomonas pyrrhocoris
            Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina;
            Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leptomonas.
REFERENCE   1  (bases 1 to 4595)
  AUTHORS   Flegontov,P., Butenko,A., Firsov,S., Vlcek,C., Logacheva,M.D.,
            Field,M., Filatov,D., Flegontova,O., Gerasimov,E., Jackson,A.P.,
            Kelly,S., Opperdoes,F., O'Reilly,A., Votypka,J., Yurchenko,V. and
            Lukes,J.
  TITLE     High-quality genome of monoxenous trypanosomatid Leptomonas
            pyrrhocoris
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4595)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2016) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4595)
  AUTHORS   Flegontov,P., Butenko,A., Firsov,S., Vlcek,C., Logacheva,M.D.,
            Field,M., Filatov,D., Flegontova,O., Gerasimov,E., Jackson,A.P.,
            Kelly,S., Opperdoes,F., O'Reilly,A., Votypka,J., Yurchenko,V. and
            Lukes,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2015) Life Science Research Centre, Faculty of
            Science, University of Ostrava, Chittusiho 10, Ostrava 71000, Czech
            Republic
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_015438375).
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Leptomonas pyrrhocoris"
                     /mol_type="mRNA"
                     /isolate="H10"
                     /host="Pyrrhocoris apterus"
                     /db_xref="taxon:157538"
                     /chromosome="Unknown"
                     /country="Czech Republic: Prague"
                     /collection_date="19-May-2010"
     gene            1..>4595
                     /locus_tag="ABB37_07648"
                     /db_xref="GeneID:26907933"
     CDS             129..4595
                     /locus_tag="ABB37_07648"
                     /codon_start=1
                     /product="RNA Interference Factor 5"
                     /protein_id="XP_015655289.1"
                     /db_xref="GeneID:26907933"
                     /translation="
MVLPGDREPWKRDDVLVSALSVEWIAKNVFLVAVPSYRRKVSCELTAVDGPRGTAPALTERVCDVLQRVNSAMRLYLRQDFYSNFPLEGYGDVIFSAETKQDTPYELHWCSLQETLVRAGVACVVRPSVIRQEALLQAEEEPTQEVKSSGASSWLHELQQREHSPLFCLERRCVVEDVMRGDVYRVSWLTDAAGTATERLASSPAELPPLLILDATVCHAVSTQPGFAALRWAQLHVLHRELVVQVHGVYPSDKDVAFNTQLETYEYLANVRGSAGVLDAEGERRDIGVTLIRQGLAWVRRVADAGVPRASNLFDLFRAVDAAAAEEATTAAAVPNRASNDTTLDVLPEVDVDACAALGKAWGLSAAAAAGLLDWHGERWRRAGAASMLHEPISQLGEPSRVAPKPGITAEAWNRFMWCADLHRDPNDEPRVYQHRPLRTLFPLAGLAEWRVRLQGQLEGAVVVNTDDGRHFLQVEVMATTPAVEWRELRRSYGYADLDVVRFSPTPGDVVLGKKVRVVITASSFGQNAEPRLRVCCTSYPASSFSLAQHKPSDVWPVMDGGRCEEELSIDGTAKEERVFVLDVVVETRDEDSMTWTQRGTGRAVYLLSPDVESDAAEATTHKDADDKPNSRSNDAESETRKHSTALQPSFSYFCKMSFFFELDAPAMDADSDAGTGGRLLSLLKQAFSELMYEDVVILPVGVAEVCGVRGLVGDLLFPSEPAPRTGANPTLRTRAPVLFARSLLSAIGQAWWPRETSSGSVTSTTPWPMSSVVYAAVLESFRVCLEKVEEEEWAARQSFLKEVEWHYQLLDQEALNTFLSYRPPTPFKMSDIAPPARSTPQRCLRFTAGHSELWRDGAAAGGIPRLRFPASILPPTVPLSLFAVRPRELFSVATTQKMTVVTQAKNAPPPKTLQEVAYNQQDWAFMRLNFPFLPNILHCDWERLPLSLRNTERGLCESIVRDGNVVREPGMLYTTDRIFSLLLSYLALLQCMQVSCGSSSKPDSSLDPSSSALASVYVALRQSTPSIWDDCKSALHFSATLFVLPSYGAGGDAARAAPHSRPLFLGSRDNVVTDAFEVPRRDNASPETVSFPLLRDLTTQCVSALALESLVESELEAKANDGEGRATTKAPTAASVTNLDEGRRPDQLRLISNQGLPWRPAQASTPILYHPLPRVAVLASPLVEREEYTADALGRLHLDRDSFAGVKAACKDEVQVRRRVVLQYRCLNQFSEKSPYKTISYGRASSVDMFRTLINDRARGKEIQAYMSLLLRRNVLTGVAETVSGASCDAAPLADGLLTLYGVPAEPLYVHYRSRADLRFTLSTICPPLRRALLQAEQNVPPKADVVEEAETALFGLYAEAAARYVRKVYERVRREQKSADAVQQISLFCTLQPWDDTIPPYIAIQVFPVYATEAETTARVLDQESIWHDPATYQNNPHRAFSLVGSRFGRLPLAELRIHYDVAKNRFGSSWNEMFESTLDPAPPSS"
     misc_feature    159..632
                     /locus_tag="ABB37_07648"
                     /note="TbRIF5 SNase domain 1; Region: RIF5_SNase_1;
                     pfam18187"
                     /db_xref="CDD:408016"
     misc_feature    657..1088
                     /locus_tag="ABB37_07648"
                     /note="TbRIF5 SNase domain 2; Region: RIF5_SNase_2;
                     pfam18189"
                     /db_xref="CDD:408018"
ORIGIN      
agttcgcccgctggctttacggtgctttcagagacgtctcagcgctctacagaagtttggaaagaaagtatgcgactctgaaaaagaggggccccacgctaggaattggtgttttcgaaaaacagaaaatggtgcttccgggcgaccgagagccgtggaagagggatgatgtgctcgtgagtgcgttgtccgttgagtggattgcaaagaacgtgtttcttgtggccgtcccttcctatcgacgtaaggtgagctgcgagctgacggcggtggacggtcctcgcggcacggctcctgcgttgacggagagagtctgcgatgtcctccagcgcgtgaacagcgcgatgcgactgtacctgcggcaggacttctacagcaatttcccgctggagggctacggggacgtcatcttctcggctgaaacgaagcaggacactccgtacgagctgcactggtgctcccttcaggagactctggtgagggcgggcgtcgcttgcgtggtgcgaccgagtgtcattcgccaagaagcgcttctccaagccgaagaagagccgacgcaggaagtcaagagctccggtgcgtcctcgtggctgcacgagcttcagcagcgtgagcacagccctctcttctgcctggagcgtcgctgcgtggtggaggacgtgatgcgaggggacgtctaccgcgtgtcgtggctcactgatgctgcgggaacggcaacggaacgattggccagcagccctgcggagctgccgccgcttctcatcctggacgccacggtatgccacgctgtgtcaacgcagccgggctttgcggccctgcgctgggctcagctgcacgtcctgcaccgcgagctggtggtgcaggtgcatggcgtgtacccctccgataaggacgtcgcttttaacacgcagctggagacgtacgagtaccttgcgaatgtccgtggatctgcgggcgtgctggacgctgagggcgagaggagggacatcggtgtcacgttgattaggcaggggctggcctgggtgcgccgtgtggcagacgcaggtgtgcctcgtgctagcaacttgttcgacctctttcgcgcagttgacgcagccgcagcagaggaagcaacaacggcagcggccgtaccgaatcgcgccagcaacgatacgacgctcgacgttcttccggaagttgatgtggacgcttgcgcggcgttgggcaaggcatggggactctctgccgcagcggccgccggattactcgactggcatggcgagcggtggaggcgtgccggcgcagcgtccatgctccacgaacctatttcgcagttgggagagccgtcacgtgttgcacctaagcccgggatcacagcggaggcgtggaatcgctttatgtggtgcgctgatttgcacagagaccccaacgacgaaccgcgcgtgtaccaacaccggcccctccgcacgctgtttccgctggccggactggcggagtggcgtgtgcggctacaagggcagctggagggcgccgtcgtggtcaacaccgacgatggccggcactttcttcaggtagaagtgatggcgacgacgcccgccgtggagtggcgggagctgcgccggtcttacggttacgctgacctcgacgtggtgcgcttctcacctacaccgggtgacgtcgtgctcggcaagaaggtgagggttgtcatcaccgcctccagcttcggccagaacgcggagccgcgcctgcgtgtgtgctgcacttcctaccctgcgagctccttctcgctggcgcagcacaagccttccgatgtgtggcccgtgatggacggcggcaggtgtgaggaagagctctccattgacgggacagcgaaggaggagcgggtgtttgtgctcgacgtcgtggtggagacgcgagacgaggactccatgacgtggacgcagcgcggcaccgggcgagcggtgtatctactctctccggatgtggagtccgacgccgccgaagcaacaacgcacaaggacgctgatgacaagccgaacagccgcagcaacgatgcggaatcagaaacacgtaaacacagcacggccctgcagccgtctttctcctacttctgcaagatgagtttcttctttgaactcgatgcgcctgcgatggacgcagactccgacgctggcacaggaggaaggctcctctcgctgctaaagcaagccttttcggagcttatgtacgaggacgtcgtcatcttgccggttggtgtcgcggaagtgtgcggggtgcgtggcctcgtcggggaccttctcttccccagcgagccagcgccgcggactggcgccaacccgacgttgcgcacgcgggcgccggtgttgtttgcgcgcagtttgctctccgcgattggtcaggcgtggtggcctcgggaaacgtcttccggcagcgtcacctcaacgactccctggccgatgtccagcgtcgtgtacgccgccgtgctagagagcttccgcgtgtgtctcgagaaggtagaagaggaggagtgggcagcgcggcagagttttctgaaggaggtggagtggcactaccaactgttggaccaggaggcgctcaacacctttctgtcctaccgccctcccacacctttcaagatgagcgacatcgccccacccgcgcgatcgacgccgcagcgctgtctccgcttcacggcgggacattcggagttgtggcgtgacggggcggctgccggagggattccgcgcctgcggttccccgcctcgattctgccgccgacggtccccctgtcgctctttgctgtccgcccacgggagctcttctcggtggccaccacgcagaaaatgacggtcgtcacgcaggcaaagaacgcgccgccgccgaagacgttgcaggaggtggcgtacaaccagcaggactgggcctttatgcggctgaactttcccttcttgccaaacattctgcactgcgactgggagcgactgccgctctcgctgcgcaacacggagcgcgggctgtgcgagtcgattgtgagggatggcaacgtggtgcgcgagccagggatgctctacaccacggatcgtatcttttctttgctcctctcctaccttgcgctgctgcagtgcatgcaggttagctgtggcagctcttccaagccagacagttcgctcgacccgtcgtcatcggcgcttgcctccgtctacgtggctctgcggcagagcaccccctccatctgggatgactgcaagtctgccttgcacttctccgccaccctcttcgttctgccctcgtacggtgcggggggcgatgccgcgagggccgccccgcacagccgccctctctttctgggcagtcgtgacaacgtcgtgaccgacgccttcgaggtgccgcggcgggacaacgcgtcgccggagacggtttcctttccgctgctgcgcgacctcactacgcagtgcgtgtccgcccttgcactggagtcactcgtggagtcggagttggaggcgaaggcaaatgatggggaaggccgggcgacgacaaaagctccgacagcggcctcggtgacgaacctcgacgaaggccggcggcccgaccagctgcgcctcatttcgaaccaagggctgccgtggaggccggcgcaggcgagcacgcccatcctttaccacccgctgcctcgcgtggcggttttggcgtccccgttggtggagcgggaggagtacacggcagacgcgctcggccgcctgcacctcgaccgcgacagctttgcaggcgtgaaagcagcatgcaaagacgaggtgcaggtccggcgcagagtggtgttacagtatcgctgtttgaaccagttcagtgagaagagtccgtacaagacgatctcgtatggcagggcatcctcggtcgacatgttcaggacgttaatcaacgaccgcgcacgaggcaaggaaatccaagcttacatgtcgctgctgctgcgcagaaatgtgctgacaggcgtcgcggaaacggtgtcgggagcatcgtgtgacgccgctcctttggctgacggtctgctcaccttgtatggcgtcccagccgagcccctctacgtgcattaccgctcccgtgcggatcttcgcttcactctcagcaccatctgccccccattgcgcagggccctgctccaggcggagcagaacgtcccaccgaaggctgacgtcgtggaggaggcagagacggctcttttcgggctctacgccgaggccgccgcgaggtacgtgcgcaaggtgtacgagcgggtgcgcagggagcagaagtccgccgacgcggtgcagcagatttcgctcttctgcacgttgcagccgtgggacgacacgatccccccgtacatcgccattcaggttttccccgtgtacgcgacggaggcggagaccacggcgcgcgtgctggaccaggagagcatctggcacgaccccgccacgtatcagaataacccccaccgcgcgttttcgctggtgggcagccgcttcggccgactgcccttggcggaactccgaattcattacgacgttgcaaagaaccgttttggatcctcgtggaatgagatgttcgaaagcactctcgaccccgctccaccgtcatcataa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]