2024-04-25 15:34:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015649166 6165 bp mRNA linear VRT 17-APR-2020 DEFINITION PREDICTED: Parus major protein argonaute-1 (LOC107214130), transcript variant X2, mRNA. ACCESSION XM_015649166 VERSION XM_015649166.3 DBLINK BioProject: PRJNA312399 KEYWORDS RefSeq. SOURCE Parus major (Great Tit) ORGANISM Parus major Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031791.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 17, 2020 this sequence version replaced XM_015649166.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Parus major Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6165 /organism="Parus major" /mol_type="mRNA" /isolate="Abel" /db_xref="taxon:9157" /chromosome="23" /sex="male" /tissue_type="blood" /dev_stage="4 year old" gene 1..6165 /gene="LOC107214130" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:107214130" CDS 101..2419 /gene="LOC107214130" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_015504652.1" /db_xref="GeneID:107214130" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDRRSREGIKLPGGGSRFSFLRCNTRDS"
misc_feature 143..367 /gene="LOC107214130" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 395..547 /gene="LOC107214130" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 548..910 /gene="LOC107214130" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(704..706,749..751,791..793,803..805,857..859, 878..880,884..886) /gene="LOC107214130" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1043..2320 /gene="LOC107214130" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1454..1456,1466..1468,1502..1513,1520..1522, 1544..1546,1553..1555,1565..1567,1577..1579) /gene="LOC107214130" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1658..1660,1664..1666,1874..1876,2288..2290) /gene="LOC107214130" /note="active site" /db_xref="CDD:240015" ORIGIN
ctttgaagtggacattcccaagatcgatgtgtatcattatgaagtggatatcaaacccgataaatgtccacgcagagtcaacagggaagtcgtggagtacatggtgcagcacttcaaaccacagatctttggtgaccgaaaaccagtctatgatgggaagaagaacatctatactgtcacggccttacccattgggaatgagcgggttgactttgaggtgacaatcccaggggaaggcaaggacaggatatttaaggtctctatcaaatggatggccattgtgagctggcgcatgctgcatgaggccctggtcagcgggcagatccctgttccactggagtccgtccaggcactggatgttgccatgaggcacctggcttccatgaggtacactcctgtcggccgctccttcttctccccccctgaaggctactaccaccccctgggagggggcagggaggtctggtttggcttccaccagtcagtccggcctgccatgtggaagatgatgctcaacattgatgtgtcggccactgccttctacaaagcccagcctgtcatcgagttcatgtgtgaggtgctggacatccggaacatcgatgagcagcccaagcccctgacggactcacagagagtgcgtttcaccaaggagatcaaaggtctgaaggtggaggtgacccactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccgacggccagccagccaccagacgttcccgctgcagctggagagtggtcagacagtggagtgcacagtggctcagtacttcaagcagaaatacaacctgcagctgaaataccctcacctgccctgtctccaggttggccaggaacagaaacacacgtaccttcccttggaggtatgtaacatcgtggcaggccagcggtgcatcaagaagctcacggataatcaaacgtcaaccatgataaaagcaacagccaggtctgccccagacagacaggaggaaatcagtcgcctgatgaagaatgccagctacaacctggatccatacattcaggagtttgggatcaaggtgaaggatgatatgactgaggtgacagggcgggtcctgcctgctcccatcctgcagtatggaggccggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggccattgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacagaccagctgcgcaagatctccaaggatgctgggatgccgatccagggccagccctgcttctgcaagtatgcccagggtgcagacagcgtggagcccatgttccgacacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccagggaagacgcctgtgtatgccgaagtgaagcgtgttggggacactctcctgggaatggccacgcagtgcgtccaggtcaagaatgtggtgaaaacctccccacagactctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccaacgctctgctgtctttcagcagccggtgatcttccttggggctgatgtcactcacccaccagcaggagatgggaagaaaccctccataactgctgttgtgggcagcatggacgcccacccgagccggtactgtgccacggtacgtgtgcagcgtcctcgccaagagatcattgaggatttgtcctacatggtgagggagctcctcatccagttctataaatccacacgcttcaaacccaccaggatcatcttctatcgcgatggtgttcctgaggggcagctcccacagatccttcactatgagctcctggcaatccgagatgcctgcatcaaactggagaaggattaccagcctggcatcacctacatcgttgtccagaagaggcatcacacccggctcttctgtgcagacaagaatgagaggattggaaagagtgggaacatcccagcaggaacaacagtggataccaacatcacccatccctttgagtttgacttctacctgtgcagtcatgcaggcattcagggcacgagccggccgtcccactactacgtgctctgggatgacaaccggttcacggcagacgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctccgtctccatcccagccccagcctattacgcccggctggtggcgttccgggcacggtaccatctcgtggataaggagcacgacaggcgttcaagggaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactagagactcctgactgtgaactggcggctttggtcctccgttgcccaccaggcgctggtaggtatttttgtgggtgttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagattatgagatgctttaatgggttgaggggaaaagaaaaaaaacaaacaactagtttataggagaagtgtaacactaacagttccccgcccccgagtaattccccctggataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttcctcgtgttacaagctagtcacctgctgccgctcgaagcaacagtcacagacttttccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaactagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctcagttgcagtttgtgtcagatcatgacctcacagtggttaaaccccattgaaagatgtgcactttcatacaggacacgtttaatggctgctgacccatttttgtttccaatgtattacttgttatttaaaactgtttctgacaaatgggggcatctcaatcccatgaggacagaaagcgctatccatgttttttctttaggttttttcccccctgaatttttatgatggacaccgggattttttactaaacattatttttatacgatattgagtctgttgccaaaatccacaagtcattaacattctcaaagtttacatccccgcacttcctgaggctgtatgctcacaccacagctctccgtttctgtccaatgagtgctgccgactgcagcctgtgctgtgccaggtgctccacagtgctcgttgcccgtgtgcattcggcatgtgtctgcccaggcctgctttcccacctaccatatctccaccttcagcaccccaggctctcaccctctctgctgctaggttttgctgatctttgtgtcatggtatcactgctctcatgcccagggtttttattctgaaagcacaccagattgttccttagaatgatgaaatccctgttgttgttatgggggaaactcctgatttgtccttgtaccaggaaaacagccttttcccccacaggaacctggtcactgcttttcagacccattttgctgcacagtgaccgtacgcacggtggcgggaccgtggtggcagctcagtaccagtatcatccgggcacattatctggggttttttctatgaaagtgttcacagcacttccttcaagagacaaatgaggcgcacgctcctgccacgctctgaggggaagagctctggtatcattttcctgctgaacgcatttcccaggcggccccacacaagcgctacccctggcccatgcgcagacagaagcacatgaaaacctctttgatttgtactttctgacgttgaaacttgccttgccttcatgaaaaccacaccggtcatgttggcccactgagctgtcctaaccctgggaattcactctttccattttcttttggggcaacgtgtctgtgaacagtgacaacatcactatgctatgcaaactaagtgctgagtccactgatgtcacgtttggtgaagattctgcgtttagcacagtcctgttttcctcaagaccacagtgtttggttcatatcctcctttgcaccttgtgtcaacctccactgctgtatacccccaaggtgacggggaggagaccaggaaccatccgtggtcagtaggtagggaactcttaaggaaggcttagagcatagggaacacatcaacacttaagtgtcaacatgagaagcctacattcctctacacaagtgcctgcatagtgacaccaatcagcacctccatctcatcctccgaactctggcttgtgttcactgaaagcaaaacaatctcagaggggctgttcccgctcacctggtgttagaaggctcctccttatgaataaaatcggggtcaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaccggaacgcacctggctgctgctctgcagtgaggggcaaaggtatttaggttccttgtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaacaatttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcatgttctgaccttatttcaccctctgtgttgggttttcatggttttggataaacaaaaaagccaatctcagtagctgctgtgccctttaaaccctgtttccactttgaagaagtttagagaggttggagtgacctgcatgttttctatactagactatgcaccgtaccctctccgcgctccagcactggcatttctccccctctcttgtctgagatgaaaacaagtagctgcatgttgaggtgcgttttgctgcctgtagcggataggtgttaccccaggtacaaatcaggatctgtagttagccacaaaccccacacgggcatcccgatcagctccgagtgtctgccttctccatgcgcacgagttccacctgcgattggaagtgtcgctgagtgcatgcagttctgtgggaagaggagtagctttcatttacctgttgaatgctgtcgtttcccttatctcgtatctgaaaagaatggggcgggagggttgctctgccctctctccgaagcttccagggcagtcagggtgttcttggatcgcacatgatgtctcaaacagcccaagcatccagcattgcctcatggaaggttttcttcttggaaaatcagtgtgaaataaaagaatgtgattgtttcaggaagggaagccagacagcaggagagcaataaacaagtgaaattcgtttcttgcccaagtgatttgcacttcaatagttgtgaaagaaaatttccaggactccagtgcttttgtgttcgatttccagcccctttcgtacctcctttctatgagcaagtgtgggactgtacatagggtgtttacaggatgctccgtttgggttgttatttttcttgtgggttttttttgctctagcttgaactctgtatggtccatttgttaaatagccgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaatttattttattaagaaaatatggcttatattttaaaggttgaatatcatttttttttatttttttttggtatgtgtggaattaaggctggtgaagagtaacaaagtccttggattaggccaaaagaaaatactgtaagatcctaaccacctctttattaaagaaagcagtatgattaaagagctccagaacattgtatttatattggatttgatttaattgcatttgtggattattttttttgccttggtcctgatttttgcttgcaacttcaactttgcagtcccaagtgtctgttaccctgtaactgttggcagaagacctaaataaaagcaatgtgaatatgtttttattgacataaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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