2024-04-19 18:01:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015629952 4254 bp mRNA linear VRT 17-APR-2020 DEFINITION PREDICTED: Parus major NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_015629952 VERSION XM_015629952.3 DBLINK BioProject: PRJNA312399 KEYWORDS RefSeq. SOURCE Parus major (Great Tit) ORGANISM Parus major Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031774.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 17, 2020 this sequence version replaced XM_015629952.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Parus major Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4254 /organism="Parus major" /mol_type="mRNA" /isolate="Abel" /db_xref="taxon:9157" /chromosome="5" /sex="male" /tissue_type="blood" /dev_stage="4 year old" gene 1..4254 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns" /db_xref="GeneID:107205521" CDS 54..3557 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_015485438.1" /db_xref="GeneID:107205521" /translation="
MALFPAFAGAAQPGEPPAGSSEGSTRELDWLSNPSFSAEDALLLHQRTTEVANLIPEKSPLIRTSSRSELSEESDTDESLKKTSKKRKKKKKKHHHKKTKKKTKGDSSSSESDVDTKHTKDKGSSKSSEKEAAANLGKKASNVTSSRSIWLDDIQAPTADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGMDAKKHCITWDSSASKRKQAQSRPERYFTKSNVKMLNTDGILVHNKNSPSDPPAFIPVSQVESDNSSDTAEVNPLGIYDSSTTMWLQGKGSKTADSESVNTRQTIEEPGINMNSVLMAKVEEYNKKVRENPRDVNAWMEFISFQDELMRGPSPYGSRGEQESRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCAEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKPDDEDDEDIDEDQEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKTEKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMSRGRHQIGHYKEGEEFIQNVFHVLSQIFTGKEKSNLAICLLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALGTAGTGGLKSAQLCSLSLLYAQLEVELLESTEGAVMSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKTYEHALQDYLSKTPVSDQDQVKDTDQLVSLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGSQKCENAGENFGILDFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSANKARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLKFMTSLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature 534..812 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(534..560,567..572,582..587,591..593,597..641, 648..656,660..668,690..698,708..713,717..722,729..749, 771..782,789..812) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1002..1997 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gcggcgccatcttgccgtcggcagctcgggcggggggcggcggcggccgagacatggcgctgttcccggccttcgccggggccgcccagcccggggagccccccgccggcagctccgagggttccacgagagagttagactggcttagtaacccaagcttctctgcagaggacgcattattactgcaccagcgcactacagaagttgccaatctcattcctgaaaaatcaccattaataaggacttcttcaagatctgagttgtcagaggagagtgatacagatgagagtctgaaaaagacaagtaagaaaaggaaaaagaaaaagaaaaagcatcatcacaagaagacaaaaaagaaaaccaaaggagattccagtagcagcgaatcggatgtggacactaagcacaccaaggacaaaggaagtagcaaaagtagtgaaaaggaagcagcagcaaatctaggtaagaaggcatcaaatgttaccagcagtcgctctatctggcttgatgatatccaggcccccacagcagacaccttccgcatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgcggggacatagcaaggtataaaaggaaaggagagtcctgtcttggcatggatgcaaagaaacattgtataacttgggacagttctgcatcaaaacggaagcaagcacagagtcgacctgagcgctactttacaaagagcaatgtcaagatgctgaacacagatgggattcttgttcataataaaaattctccatctgatccacctgcttttataccagtttcccaagtggaatctgacaattcttctgacacagcagaagtaaatcctcttgggatttatgattcatcaaccacaatgtggctacaaggaaaagggtccaagactgcagacagtgagtctgtaaatacacggcaaacaattgaagagcctgggataaacatgaactctgttctaatggcaaaagtagaagaatataacaagaaagtcagagaaaacccaagagatgttaatgcttggatggagtttatttcctttcaggatgaattaatgagaggacctagcccttatggcagtaggggagagcaggaatcaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcgcagaattctgggaaccaccagctttgatcaaagaatggcagaagctgatttttttacatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagtttactaccttttctgtttcaaagatcaacagtctctatggaaaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagctatgctggctatatttattcagcaatgtcactttctgagacaggctggccattctgagaaagcagtgtccttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaacctcgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaggaaaagggtggctgggttgttcttaagcctgatgatgaggatgatgaagacatagatgaggatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatattgaatattcccgtgaggcaaggcactggttaccttggaggccagacaaaactgagaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacatcaactattgtactcttttttgcaatttctgggagttccatgtacaagtaaactctttccttctagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataagccgctgacttcagttgattttccactttctggattcaacagtattggtcatatggatacaatgtcgagaggcagacatcagataggccactataaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatatttacaggaaaggaaaaatctaacctggctatttgtttgctacagtatgaaatatctaaggtaattcaatgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaagaagttggccaaaaatttccttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagaatggctgcttggtaacacagatgattccaggaaggtgtttgacacagctcttggcacagcagggacaggaggattgaagagtgcccagctctgcagcctcagcctgctctacgctcagctggaagtggaactgctagaaagtacagaaggagctgttatgtcacgtgctgttcatatattgaccaaattgactgagaatggaccatatgtgccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgaacatgcacttcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcaaggatactgatcagctggttagcctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatacacaggcttcagaaaaacttgaagcttctggttcacagaaatgtgagaatgctggagagaattttggtatcctagattttcccactgctctcgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaaggaagtctcacagcgcgaacaaagcacgaagattttttgatagtgtcacaaggtctactaactctttagagccatggttgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggttcagagggcagatgttggtgaaatacactgcactattcctgaaactggattaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtacccattgtccactgctatggagaatgtatttgaaatttatgacttcactaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggacgcagtagagtatttccctgatgatctgcaagaaacgcttgatctaatgactgaaaaagaactgagagtgcgggtacctatggaagagctggatctactactagagatttaaaagaagactgtaatggagtggaggaagtacagaagctgcttccaaagctgacaataagatccatctctttttcatacagaactctgttgggacttgggtactatgtacttgatacttttttgttgttgttaaatctttttctttgttgttaaattcctatcaaaatggagttctactacctgcaagtgttctggaatcaagaactgcattttgcccacaataatggatccatttttctgaagtattgctggctcccacagaagcataccctctttaaatagcctcctgttggaagttgcctgcatttcttattctattgtttgaaattacattccctggggctcagaagaggttcagtacttgccaactatggcttggtgagcagcacaggaaataaacatatgccaaatggatgctccactgtcctccagttggcagacttcagtaatttccttcagcatggtatgcctgtgtatatgtaactgccaagtcagagccattacatctgtacatatactgtgagtaaaagctaaatttttgtttgagcaggcacctattttggtatgctttgacagattaccattttaatatatttttttctgaaaaatatacctgaatatttgaaaattcaaaagtaacttgttttttatttattaatagaactttaagtgtattaaaaatgaacacgtgtccataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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