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2024-03-29 11:28:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015598969           15115 bp    mRNA    linear   MAM 07-MAY-2018
DEFINITION  PREDICTED: Pteropus alecto argonaute 3, RISC catalytic component
            (AGO3), transcript variant X7, mRNA.
ACCESSION   XM_015598969
VERSION     XM_015598969.2
DBLINK      BioProject: PRJNA232518
KEYWORDS    RefSeq.
SOURCE      Pteropus alecto (black flying fox)
  ORGANISM  Pteropus alecto
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera;
            Pteropodidae; Pteropodinae; Pteropus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006443568.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 7, 2018 this sequence version replaced XM_015598969.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pteropus alecto Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15115
                     /organism="Pteropus alecto"
                     /mol_type="mRNA"
                     /db_xref="taxon:9402"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="Australia: Anglican Church Grammar School, East
                     Brisbane"
                     /collection_date="Nov-2008"
     gene            1..15115
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102879547"
     CDS             177..2057
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X5"
                     /protein_id="XP_015454455.1"
                     /db_xref="GeneID:102879547"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFNADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    177..518
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(312..314,357..359,399..401,411..413,465..467,
                     486..488,492..494)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    651..1928
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1062..1064,1074..1076,1110..1121,1128..1130,
                     1152..1154,1161..1163,1173..1175,1185..1187)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1266..1268,1272..1274,1482..1484,1896..1898)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aaaaactaatctgagatgccagttaggaggctttttcaatcactagttcaggtttcagtccacatgttacttccttgagaagcagtatttggcacccttcaccccccccaaccagccatcccccaagtctgatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacaatatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacgtatctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaaccgacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctccagtatggaggacggaatcgtacagtagcaacaccaagccatggagtatgggacatgcgaggaaaacagttccacacaggagttgaaataaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcggggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacatactctgggctgcagctcattattgtcatcctgccagggaagacgcccgtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccatctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggacgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttcggcaggtgttatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagattatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgacaggacagaaagggttggaaggagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttaatgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtagacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagattattctctgagaggaagaactgaaagatgaatcgacatacaacgtgtttccagtggagttcgttgagtggggatgcctgcagccatacagaaaccaacactgtggggaccagggtctgatttttatgttgatacaagtaagattgtttacttcatcaaggaacacagcactattatgcaatatgaaaccagccaacagcgcttttgtgcggtctcctgtaggaagtatcgccaatgttttgttttcactttctttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaaaagtaaagaaaaggtaaatgatggtttaaaaaaaaacacctacatgaataatcagtgattgttcacaattgtgtgtgcaaaaaaattaatgtgcattcatgtattgtaaaaggtatctgtatattttaaatatatacatatatacttcatatgcatatatatctggatctacatttataatagatatatatgttctttgtatatattttatagttcattccattggggaacttcctttcccttttattatcctcccaccaccacttttatttctctctctacctcccttgccttcatcgcctacatttttttcccctgatgctaccagtgacattcaaatgttcatgtatctggttcatttgaatatgaagcatggcaaactagacttttttgttttgttttgcacaccctctcctgtctcttgtctcatacacaattctgagccctcaactcgatattgctttcttaagaaacaaaattattttatatatatatggttttatgagagtttgtgtttgccccctccaaatttacatttgccatttgtgcaatgtgtacataagcagtagcaacctaaactattctttttctttagtgagtttgttaaagctgctataaatataaaaccttgtcaaaagtttaactctttctctctataagtgatgtgtattctaaagccttttgtttctatgggttatacatggaaatctctaaaagcttttatgaagagtaaatattttaaatgattagaacaaaatagggttgaggcctctgaagttgggtcaagagagaagggattgttgaggtatttttaatttttttttttttttttttttgctagtttacttgctgcctctcataccttaatgtgcttttcatatatatatttttatatatatgtttgtatatatataaacatatatgtatgtgttttgaagtatagcttccttttcttttctatttattagaatagtgttttaataattatagaaccatattggcaacatcttttatagaaataatcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatgtttttatcacagatagtggaagaaacaggcaccttcataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaagtctcaagcatgtctttaaaaatcataatgaaaatgaaggaagttaatatcctagataagtctgaccttgaatattaaaaataaagttgaattttgatttaagatatgaccacgatagatgaaaatttataaagtatttaaattttttgaaaataaattatgtttattgaagaatcatactggttacattcccattttcattgactaaaattaatcaggaaaatgtggccatttaaacttttttttttttttgcttatttattaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaagactttattttaaatgcgctaagtcagtgaaatgtggaaaaaagttttgcaaaactttcattatataattatttcactttaaggtattaaaaagtactatgaagttgtcaaaaccaagttcaccagtaacattggattcaggggagctttgcactttgtgactcatgaaaatgcattttaattattattattattttttttttgcactggttcagagtataaatattacagattgtttccagtgggcattgttgttaaccttttggaattccatctgctcatgaaaacgaatggattagttctacagtttctctcttacctataacccactcttattgccaatttactgtattttgagcctaaaacctgagcccatgtcctccaacaggtatgaaatcttttatccccctgccagaaaactaagtactgtattttgtatgtttattatattgaaatgtctgaaatgtaatttacaacactgtttcaaagccctttacatgaagtaatatttgtatagtatatacgtttttcttccaaccttcccccacctcctccaaaaagtcctttaaagcatgtatgttttttttacattgaaatttcactgactgtagtagtcagaacatggacgagagaaaatggtgtatcctacgtggtaaaaacttgattgccatatgctcattcagtatgagtaaaacatcttttattaatgggagttgcacagattcatgtgggaaactttagggtccagggaagaactgtagatatcctttccctatttactgctttacttaattttcagttacttagtttcacatgcacttgagtgaagcccataatttaaatctatttagaaggacttttacagaggaaaaaaaaatttttcaatataaagctttacctttgaagtgagttcttttttagggtttctttcttacagtttcaacattactagtttaaggttggttaactagaaagaatgtgtatatttctattttgcttactaacaaattggtaatcaaatttaattacaagaaacctgtgcttagaattttaagataaaagactgagagggaaatactttt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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]