2024-05-09 03:55:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015572831 2505 bp mRNA linear MAM 09-FEB-2016 DEFINITION PREDICTED: Myotis davidii argonaute 1, RISC catalytic component (AGO1), transcript variant X3, mRNA. ACCESSION XM_015572831 VERSION XM_015572831.1 DBLINK BioProject: PRJNA232515 KEYWORDS RefSeq. SOURCE Myotis davidii ORGANISM Myotis davidii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006300377.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis davidii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2505 /organism="Myotis davidii" /mol_type="mRNA" /db_xref="taxon:225400" /chromosome="Unknown" /sex="male" /tissue_type="spleen, kidney and small intestine" /country="China: Taiyi Cave, Xianning, Wuhan, Hubei Province" /collection_date="21-Aug-2011" gene 1..2505 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:102769584" CDS 241..2427 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_015428317.1" /db_xref="GeneID:102769584" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERLPGL"
misc_feature 316..2418 /gene="AGO1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1408..>2412 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1828..1830,1840..1842,1876..1887,1894..1896, 1918..1920,1927..1929,1939..1941,1951..1953) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
tggggctgggggtcgcgcctgcgcactggcaactggccgggcgctcactgggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggtagcggtgcgagcggccgggcttcggggaggagccgagcccggcccgggaatcctagcagctagagtgcggggtacctaggcccctcacactggactccacagtctcctggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcgcatacctgccccctctgcagcaggtgttccaggcacctcgaaggcctggcattggcacagtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaaaccagataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccccggggaagggaaggatcgaatattcaaggtctccatcaagtggctagccatagtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccctggagtctgtgcaagcccttgatgtggccatgagacatctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagccgctcacggactctcagcgtgtgcgctttaccaaggagatcaagggcctgaaggtagaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacacgccgccctgccagccatcagacgtttcccttgcagctggagagtggacaaactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcttgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaatcagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacaggacgagtgctgccggcgcccatcttgcaatatggcggccgggtgagcaggaaccgggccattgccacacccaatcaaggtgtctgggacatgcgagggaaacagttctacaatggtattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcagtgtcgagaagaggtgctcaaaaacttcacagaccagctgcggaaaatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacgtactctggactacagctcattattgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagacacacttttgggaatggctacacagtgtgtgcaagtgaagaacgtggtgaagacctcacctcaaactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcataaacaacatcctagtcccacaccagcgctctgcagtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccgtctatcacagcagtggtaggcagtatggatgcccatcccagccgttattgtgccactgtgcgggtgcagcgacctcggcaggagatcattgaagacttatcgtacatggtgcgtgagctgctgatccagttctacaagtccacccgcttcaagcctactcgtatcatcttctaccgagatggggttcctgaaggccagctccctcagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgactccctggcctatagaccccatatgtagaccagctcccagagaagggaaagggaactaccatttattgaacttctcctatgtgccagacactg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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