2024-04-20 18:21:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015571431 3368 bp mRNA linear MAM 09-FEB-2016 DEFINITION PREDICTED: Myotis davidii NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_015571431 VERSION XM_015571431.1 DBLINK BioProject: PRJNA232515 KEYWORDS RefSeq. SOURCE Myotis davidii ORGANISM Myotis davidii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006284349.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis davidii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3368 /organism="Myotis davidii" /mol_type="mRNA" /db_xref="taxon:225400" /chromosome="Unknown" /sex="male" /tissue_type="spleen, kidney and small intestine" /country="China: Taiyi Cave, Xianning, Wuhan, Hubei Province" /collection_date="21-Aug-2011" gene 1..3368 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:102755227" CDS 78..3272 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_015426917.1" /db_xref="GeneID:102755227" /translation="
MALFPAFAGVSEAPDSGSARKELDWLSNPSFCVETVTTLSQQAEEAAALVSEGSPLTRSPLKSELSDESDSNRNLRQASRKKKKEKKKKRKHQHHKKTKRKRGQSSSSGSELDTDSEKDKSPRGLRGGNRGPETLSQEKNAAAAAAGPRCVWLEDIQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPTGKKRAHKHVERYFTKKNVGLMKADGVAVSRQTDPPSSAPLSFIPVKDSDDVAPPVTTWLNPLGIYDQSTTQWLQGQGPSEQESKQPDSQPDREDALLKARVEEFNRRVRENPRDTELWMAFVAFQDEVMRSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIDSNPGSVDLKLAKLKLCTELWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHAEKAVSLFQAMVDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDDDDDEPEEDDQDIRDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQALQFQLIVAFLQFLGVPAGFSPPAACLYLAMDENSIFDNGLYDEQPLTFLNLSFSGVSCVGRTDQLGCRRWTRGHSREGEEFIRNIFHLVMPLFSGRERSQLCSSWLRYEIAKVIWCLHTKNKKRLKSRGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALSTAGSRELKDPEVCELSLLYAELELELAPDTRVATAARAVHILTRLAESSPYGPYTGQVLAIHILKARKAYEHALQDCLCEDRVSDPAATASLSRLVSVVKCFMLFQYLTIGIDAAVQIYEQVFAKLKGSLSPEGPGLEASACPPSVSSVLEAVTLMYTSLLRFHMKVSVYPLAPLRQALSEALRLYPGNQVLWRSYVQLQSKSHSASKTRRFFGAITRSAAPLEPWLFAIEAEKMRKRLVKTVQRWQGGLRHNS"
misc_feature 564..854 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(564..590,597..602,612..617,621..623,627..671, 678..686,690..698,720..728,738..743,747..752,759..779, 804..815,825..854) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1020..2018 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ccacgatggcctcactaccggcgtccgctcgccgggcgccatttatgtagccgggaacggcggtgcggcctgcgaccatggcgctgttcccggcctttgcgggcgttagtgaggctcccgatagcgggagcgccaggaaagaattagattggctgagcaacccaagcttttgtgttgaaaccgtcacaacgctgagccaacaagctgaagaggccgcagctcttgtttctgaagggtcaccactgacgaggagtcctctgaaatcagagctatcagatgaaagtgactcgaacagaaacctcagacaagcaagcaggaaaaagaagaaggagaaaaagaagaagaggaagcatcagcaccacaagaaaaccaagagaaaacgcgggcagtccagtagcagtgggtccgagctggacactgactctgaaaaggacaaatcccccagaggcctcagaggcggcaacagaggaccggagacactgagccaagaaaagaatgctgctgctgctgctgctgggccccgctgtgtgtggcttgaggatatccaggctctgacaggagaaaccttcagaacagataagaaaccagaccctgcaaactgggagtataagtctctctaccgaggagatatagccagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctcccacgggaaagaagcgtgcgcacaagcacgttgagcgctatttcacgaagaagaacgtggggctgatgaaggccgacggagtcgccgtgagccgtcagactgaccctccctcgtctgcgcccctctccttcatcccagtgaaggactcggacgatgtggctcctccggttacaacctggctgaaccctctggggatttatgatcagtccaccacccagtggttacagggacaaggtccttcggagcaggaatccaagcagccagactcccagccggaccgtgaggacgcgcttctcaaggccagggtggaggagttcaaccggagggtgcgggagaacccacgggatactgagctgtggatggcgttcgtcgcttttcaggacgaggtcatgaggagccctggcctgtatgccatcgaggaaggcgagcaggagaagcggaagcggtccctgaagctcatcctggagaagaagctggccattctggagcgggccatcgacagcaacccgggcagcgtggacctgaagctcgccaagctgaagctctgcacggagctctgggagccctccacgctggtcaaagagtggcagaagctgatattcctacaccccaacaatacagccctttggcagaaataccttctgttttgccagagccagttcagcaccttttcaatatcaaaaattcacagcctttatgggaaatgcttgagcacattgtctgctgtgaaggacggcagcatcttgtctcaccctgagctgcccggcaccgaggaggccatgtttgcgctctttctccagcagtgccacttcctgcgccaggccgggcacgcggagaaggccgtctccttgttccaggccatggtcgacttcaccttcttcaaacccgacagcgtgaaagatctgcccaccagagggcaggtggagttctttgagcccttttgggacagcggagagccccgggccggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgatgatgatgatgaaccagaagaggatgaccaggacatcagagataagaccctgcccaggtggcagatctggcttgccgctgagcggtcccgagaccagaggcactggcggccgtggcggcctgataagaccaagaagcaaacggaggaagactgtgaggatccagagagacaggtgctgtttgatgatattggacaatctctaatccgactttccagccaagctcttcagttccagctgattgtggcctttctgcagttcctgggtgtgcctgctggcttcagccctccagccgcctgcctctacctggccatggatgagaacagcatcttcgataacgggctttatgacgaacagccattgacttttctcaacctttcattttctggcgtcagctgtgttggtcgcacggaccagttgggctgccggcgctggaccaggggccacagccgagagggcgaggagttcatccgcaacatcttccacctggtgatgcctttgttttccggcagggagaggtcccagctctgctcctcctggctacggtacgagatcgcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaaatcacgaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaatttttgcctctggaagcagtatgcacatctggaatggttgcttggcaacacagaggacgccagaaaagtcttcgatacagcgctcagcacggcagggagcagggagctgaaggaccctgaggtctgtgagctcagtctgctctatgctgagctggagctggagctggcaccagacaccagagtggccaccgcggcccgagctgttcacatattaaccaggctggctgagagcagtccctatgggccctacactgggcaagtcctggccattcacattttgaaagctcggaaggcttacgaacacgcactgcaggactgtctgtgtgaggaccgcgtctccgatccagctgccaccgcctccctgagccgcctagttagtgtggtgaaatgctttatgctcttccagtatttgaccatagggatcgatgccgccgtgcagatatacgagcaggtatttgcaaaactgaagggctctctttcccccgagggcccaggcctggaggccagtgcctgccccccaagtgtgagcagcgtcctcgaggccgtcacactgatgtacacgagcctgctcaggttccacatgaaagtcagcgtgtaccctctggctcctctgcggcaggcgctctcagaggctttgaggttgtatccgggcaaccaggttctttggaggtcctacgttcagcttcagagcaagtcccacagcgccagcaagaccaggaggttcttcggtgccatcaccaggtctgcggcacccttggagccttggctgtttgccattgaagctgagaaaatgaggaaacgactggtgaagaccgtccagagatggcagggaggtctacgccacaattcctgagaccggcttgacgcaccggatcagagccctgtttgaaaatgcgatccggagtgagcacggcagccagtgccccttactgtggaggatgtacttgag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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