2024-04-23 19:19:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015561416 3561 bp mRNA linear MAM 09-FEB-2016 DEFINITION PREDICTED: Myotis davidii argonaute 2, RISC catalytic component (AGO2), mRNA. ACCESSION XM_015561416 VERSION XM_015561416.1 DBLINK BioProject: PRJNA232515 KEYWORDS RefSeq; includes ab initio. SOURCE Myotis davidii ORGANISM Myotis davidii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006282874.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis davidii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3561 /organism="Myotis davidii" /mol_type="mRNA" /db_xref="taxon:225400" /chromosome="Unknown" /sex="male" /tissue_type="spleen, kidney and small intestine" /country="China: Taiyi Cave, Xianning, Wuhan, Hubei Province" /collection_date="21-Aug-2011" gene 1..3561 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102762576" CDS 16..2742 /gene="AGO2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_015416902.1" /db_xref="GeneID:102762576" /translation="
MAQPGPSCFREPPVPFPFLFGSRVTWPLCLAVLAPPAPPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGREKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASNQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYGRRTAGGSGAASRGAGRWWGGPSSASSAWSHAALPRPVRLSECVAKRTSPSALAAQEWVPARTGRCPASASSSLSPQGPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGQSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 364..588 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 616..768 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 769..1131 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(925..927,970..972,1012..1014,1024..1026,1078..1080, 1099..1101,1105..1107) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1264..2613 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1951..1953,1957..1959,2167..2169,2581..2583) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
ccggggagggggaggatggcccagccaggaccatcctgcttcagggagccgcccgtcccgttcccgttcctgttcggttcccgcgtgacgtggcctctttgccttgcagtgctcgcccctccggcgccgccgccgccccccatccaaggatatgccttcaagcccccgcccagacccgacttcgggacctcggggagaacaatcaagttacaggccaacttcttcgagatggacattccgaaaatcgacatctatcactacgagttggacatcaagccagagaaatgcccgcggagagtgaacagggaaatagtggagcacatggtccagcactttaaaactcagatcttcggggatcggaagccagtgttcgacgggaggaagaacctctacacagcgatgccccttccgatcgggcgggagaaggtggagctggaggtcacgctgccgggcgaagggaaagaccgcatcttcaaggtgtccatcaagtgggtgtcctgcgtgagcttgcaggcgttacacgatgcactttcggggcggctgcccagcgtcccctttgagacgatccaggccctcgacgtggtcatgaggcacctgccgtccatgaggtacacgcccgtgggccgctccttcttcacggcctccgagggctgctccaaccccctgggcggtggccgggaagtgtggttcggcttccatcagtctgtccgcccttctctttggaaaatgatgctaaatattgatgtctcggcaacagcgttctataaggcacagccagtcatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacagaaacctctgacagattcccaaagggtcaagtttaccaaagaaatcaaaggtctgaaggtggagatcacacactgtgggcagatgaagaggaagtaccgcgtctgcaacgtgacccggcggccggccagcaaccaaacgttcccgctgcagcaggagagcgggcagacggtggagtgcacggtggcccagtacttcaaggaccggcacaagctggtgctgcgctacccccacctcccatgtttacaagtcgggcaggagcagaaacacacctaccttcctctcgaggtctgtaacatcgtggcaggacagagatgtataaagaagttgaccgacaatcagacctcaaccatgatcagagcgacggccaggtcggcgcccgatcggcaagaggagattagcaagctgatgagaagtgcgagtttcaacaccgacccctacgtccgggaatttggaatcatggtcaaagatgagatgactgacgtgactgggcgggtcctgcagccgccctccatcctctacgggggccggaataaagcgattgccacgcctgtgcagggcgtctgggacatgaggaacaagcagtttcacacgggcattgagatcaaggtgtgggccatcgcctgcttcgcaccccagcgccagtgcaccgaggtccacctcaagtccttcacggagcagctcagaaagatctccagggacgcggggatgcccatccagggccagccgtgcttctgcaagtacgcccagggcgctgacagcgtggagcccatgttccggcacctgaagaacacgtacacgggcctgcagctggtggtggtcatcctgccgggcaagacccccgtctacggtaggcggacggctggtgggagcggcgctgcttcccggggagccgggcggtggtggggtgggcccagctctgcgagctcagcctggtctcacgcggccttgccacgtcctgtgaggctctctgagtgcgtcgctaagagaacttcgcccagcgccttggccgcccaggagtgggtgcccgcgcggactgggcggtgcccagcctcggcctcaagctccctctccccccaagggccgcccgtgttccagcagccggtcatcttcctgggggccgatgtcacacacccccccgcgggggacgggaagaagccttccatcgctgccgtcgtgggcagcatggacgcccaccccaaccgctactgcgccaccgtgcgggtgcagcagcaccgccaggagatcatccaggacctggcggccatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacgcgcatcatcttctaccgcgacggcgtgtccgaggggcagttccagcaggtcctgcaccacgagctgctggccatccgcgaggcctgcatcaagctggagaaggactaccagccgggcatcacgttcatcgtggtgcagaagcggcaccacacgcggctcttctgcacggacaagaacgagcgggtcgggcagagcggaaacattccagcaggcaccaccgtggacacgaagatcacccacccgaccgagttcgacttctacctgtgcagtcacgctggcatccagggaacaagcaggccctcccactaccacgtgctttgggatgacaatcgtttctcttccgacgagctgcagatcctcacctaccagttgtgtcacacctacgtgcgctgcacgcgctcggtgtccatcccagcgccagcatactacgctcacctggtggccttccgcgccaggtaccacctggtggataaagaacatgacagtgctgaaggaagccatacctccgggcaaagtaacgggcgggaccaccaggcactggccaaggcggtccaggtccaccaggacacgctgcgcaccatgtactttgcttgacatgttgtgtttacgattgtgagcggagtcggattcacacgagaccagcgacactcagaccaacggactccagccccgtggcagccagcactggacaccacacgtcgtggactcagccgaggctcctttcccagaatgccttccgtccggatttcacactcgttctgagctgcagacctgtatgagaccccactgtcgcaggagagatggtttgccaaaatctatccgctgcttattaatagtcccgtatttcctaaaaacatctcctaaaagcagtctatgaactcagggctttaaaacatttttaatttatttggtcattcgatttacttgtttttaacacgtgattctgtatggaattgatgggctcaaactagctgtgagcgttctctgagggtgaaagcaacgcaaacactattgtggttttaaagccttgaccattctgacgttgtcactcacgtgtgtcccaccgacactcgtgtgccctgacgtggctccgcaagctcttagggacccgcggtgggcgccccacccgcgggggaaaggggctgggacgccagagaccacgcccactcaacatttctaggtccagagagattggcagccaagtgccattttaataaaaatttattaaaaaaacaaaaaaaaaaagaaaaaagatggtatgccgacagtctaatggtgagattggtcctctaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgatgatacagtacaatcctttcactgtatgtctttaatgtagagaatatatatatctggttgcagtattaa
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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