2024-03-29 20:05:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014946455 4616 bp mRNA linear VRT 09-DEC-2015 DEFINITION PREDICTED: Calidris pugnax protein argonaute-1 (LOC106890550), mRNA. ACCESSION XM_014946455 VERSION XM_014946455.1 DBLINK BioProject: PRJNA305421 KEYWORDS RefSeq; includes ab initio. SOURCE Calidris pugnax (ruff) ORGANISM Calidris pugnax Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015090879.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Calidris pugnax Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4616 /organism="Calidris pugnax" /mol_type="mRNA" /isolate="Ruff" /db_xref="taxon:198806" /chromosome="Unknown" gene 1..4616 /gene="LOC106890550" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:106890550" CDS 199..3537 /gene="LOC106890550" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_014801941.1" /db_xref="GeneID:106890550" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVHPSCPASARFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 226..>1809 /gene="LOC106890550" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1141..>1809 /gene="LOC106890550" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(1552..1554,1564..1566,1600..1611,1618..1620, 1642..1644,1651..1653,1663..1665,1675..1677) /gene="LOC106890550" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature <1759..1998 /gene="LOC106890550" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1792..1794,1837..1839,1879..1881,1891..1893, 1945..1947,1966..1968,1972..1974) /gene="LOC106890550" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2131..3408 /gene="LOC106890550" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2542..2544,2554..2556,2590..2601,2608..2610, 2632..2634,2641..2643,2653..2655,2665..2667) /gene="LOC106890550" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2746..2748,2752..2754,2962..2964,3376..3378) /gene="LOC106890550" /note="active site" /db_xref="CDD:240015" ORIGIN
gcaggcgcatacctgccacccttgcagcaggtatttcaagcgccgcgtcggcccgggataggaaccgttgggaagcccatcaagctcttggccaactactttgaagtggacattcccaagatcgatgtgtatcattatgaagtggatatcaagcctgacaaatgtccacgcagagtcaacagggaggtcgtggagtacatggtacagcacttcaaaccacagatctttggtgaccgaaagccagtctatgatgggaagaagaacatttacactgtcacggccttacccattggaaacgagcgggttgactttgaggtgacgatcccaggggaaggcaaggacaggatattcaaggtctccatcaaatggatggccatcgtgagctggcgcatgctgcacgaagccctggtcagcgggcagatcccggtccctctggagtccgtccaggccctggatgttgccatgaggcacctggcttccatgaggtacactcctgtgggtcgctccttcttctcccctcctgaaggttattaccaccccctgggaggtggcagggaggtctggttcggtttccaccagtcggtcagacctgccatgtggaagatgatgctcaacattgatgtgtcggccaccgccttctacaaagcccagcccgtaatcgagttcatgtgtgaggtgctggacatccggaacatcgacgagcagccaaagcccctgacggactcacagagagtgcgtttcaccaaggagatcaaaggtctgaaagtcgaggtcacccactgcgggcagatgaagaggaaataccgtgtgtgtaacgttaccaggcggccggccagccaccagacgttccccctgcagctggagagcggtcagacagtggagtgcaccgtggcgcagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggtgggccaggagcagaagcacacctacctgcccttggaggtgtgcaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcaaacgtcaaccatgatcaaagcaacagccaggtctgccccagacaggcaggaggaaatcagtcgcctgatgaagaacgccagctacaacctggacccctacatccaggagtttgggatcaaggtgaaggacgacatgacggaggtgacagggagggtcctgccagcacccatcctgcagtatggaggccggaaccgggccattgcaacccccaaccagggcgtgtgggacatgagagggaagcagttctacaacggcatcgagatcaaagtctgggcgatcgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacggaccagctgcgcaagatctccaaagacgcggggatgcccatccagggccagccctgtttctgtaaatacgcccagggagcagacagtgtggagcccatgtttcgacacctcaagaacacctattcggggcttcagctcatcatcgtcatcctgccagggaaaaccccggtgtatgccgaggtgaagcgtgttggagacaccctcctgggaatggccacccagtgcgtccaggtcaagaacgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccagcgctctgcggtctttcagcagccagtgatcttcctcggggccgatgtcactcacccgccggcaggagatgggaagaaaccctccataactgctgtgcatccttcgtgtcctgcctctgccaggttccccctgcagctggagagcggtcagacagtggagtgcaccgtggcgcagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggtgggccaggagcagaagcacacctacctgcccttggaggtgtgcaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcaaacgtcaaccatgatcaaagcaacagccaggtctgccccagacaggcaggaggaaatcagtcgcctgatgaagaacgccagctacaacctggacccctacatccaggagtttgggatcaaggtgaaggacgacatgacggaggtgacagggagggtcctgccagcacccatcctgcagtatggaggccggaaccgggccattgcaacccccaaccagggcgtgtgggacatgagagggaagcagttctacaacggcatcgagatcaaagtctgggcgatcgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacggaccagctgcgcaagatctccaaagacgcggggatgcccatccagggccagccctgtttctgtaaatacgcccagggagcagacagtgtggagcccatgtttcgacacctcaagaacacctattcggggcttcagctcatcatcgtcatcctgccagggaaaaccccggtgtatgccgaggtgaagcgtgttggagacaccctcctgggaatggccacccagtgcgtccaggtcaagaacgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccagcgctctgcggtctttcagcagccagtgatcttcctcggggccgatgtcactcacccgccggcaggagatgggaagaaaccctccataactgctgttgtgggcagcatggatgcccaccccagccggtactgtgccaccgtgcgcgtccagcgtcctcgccaggaaatcatcgaggacttgtcctacatggtgagggagctcctcatccagttctacaaatccacccgtttcaaacccaccaggatcatcttctaccgcgacggcgttcccgaggggcagctcccacagatccttcactatgagctccttgccatccgagacgcctgcatcaaactggaaaaggattaccagcccggcatcacctacatcgtcgtccagaaaaggcatcacacccgtctcttctgcgcagacaagaacgagaggatcgggaagagcgggaacatcccagcaggaacaacagtggatacaaatatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggtacgagccggccgtcccattactacgtgctgtgggatgacaaccggttcaccgcggatgagctgcagatcctcacctaccagctgtgccatacctacgtgcgctgcacccgctccgtctccatcccggccccggcctactacgcccggctggtggccttccgagcccggtaccatctggtggacaaggagcacgacagtggcgagggcagccatatatccggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcgttgggacaccttgtgttttttttccaatgagaaatcactgcagggcaggcagcgtcgattcgaggcaggagaccagcaccacgggacagagagatccaacacctttgtaggattggaagagaccgatgattatttttttaatttttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactatagactcctgactgtgaactggcggatttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagaatatgagatgctttaatgggttaaggggaaaaaaaaaacaaaacaactagtttataggagaattctaacactaacaggtcccccctgcccccgaacgattccccccccatataatgtaaggcaccctagcacttagctcagaactgagaactgtcttcctcgtgttaaaagctagttcgctgctgccacttgaagcaacagtcacagacttttccatgggtgagtgccttactacgatgctgcaaaatttcaatgtttttaatcttgtaaggaaaatagtaatctcgtcttgatggtggtccatatttccatcggaaggagttaattttctatggtcctaagttgcagtttgtgttagatcccgacctcatggtggttaaactccattgaaagatgtgcactttcatacaggacacgtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgtttctgacaaatgggggcatcttcatcccatgaggacagaaattgctatcgattttttttcttttttttttttttttctttttcttttttttttttttcctgaatttttatgatggacaccgggatttttttacgaaacatt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]