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2024-03-29 15:32:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_013436821            2136 bp    mRNA    linear   INV 12-AUG-2015
DEFINITION  Necator americanus PAZ domain protein partial mRNA.
ACCESSION   XM_013436821
VERSION     XM_013436821.1
DBLINK      BioProject: PRJNA279932
            BioSample: SAMN02953824
KEYWORDS    RefSeq.
SOURCE      Necator americanus (New World hookworm)
  ORGANISM  Necator americanus
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Strongyloidea; Ancylostomatidae;
            Bunostominae; Necator.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Mitreva,M.
  TITLE     Draft genome of the hookworm Necator americanus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2136)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2136)
  AUTHORS   Mitreva,M., Abubucker,S., Martin,J., Minx,P., Warren,C.,
            Pepin,K.H., Palsikar,V.B., Zhang,X.W.E. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2013) The Genome Institute, Washington University
            School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_013550919).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Necator americanus"
                     /mol_type="mRNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:51031"
                     /chromosome="Unknown"
                     /lab_host="hamster"
                     /country="China: Hunan Province"
     gene            <1..>2136
                     /locus_tag="NECAME_00996"
                     /db_xref="GeneID:25341040"
     CDS             <1..2136
                     /locus_tag="NECAME_00996"
                     /inference="protein motif:HMMPfam:IPR003100"
                     /inference="protein motif:HMMPfam:IPR003165"
                     /inference="protein motif:HMMPfam:IPR014811"
                     /codon_start=1
                     /product="PAZ domain protein"
                     /protein_id="XP_013292275.1"
                     /db_xref="GeneID:25341040"
                     /db_xref="InterPro:IPR003100"
                     /db_xref="InterPro:IPR003165"
                     /db_xref="InterPro:IPR014811"
                     /translation="
IHSPDNLSSSPRKSSPSNSSRITGSPRDLSPLLLQELACMNVREVAARPGIGQIGRPIAIRSNFFEIDLSSSNMMVVQYHVEVHHPGSRKLDRETTIFRYRFQMRLEADVPLAKDSRERTPCAVSFQCVGPVLIEMRRTRTNNLDERVLTPIQILDIVCRQSLTCPFIDNSANFYSWKSSCYRIPINGALALDLEGGKEMWTGFFSSAHVASGWKPLLNIDGEFNISNAFLLISSEMEFQLHTLPSTKQKFLWFNLCPSTLYKEFSLSNHEMKILAEAVKGIKIRISHRKGAVRVYRVNSLQMPADQLTFKGVTEDGRETIKSVAQYFAEKYAELRFPKLPCLHVGPPTRNIFFPLEVCEMDTPQKYNKKLSEKQTSSIIRAAAVDASQREERIAQLCQQAGFDRDPFLKEFGLSVSPRMFETMARVIQPPQIMFGDNSKMVDPIVHPKDGAWSMDNQTLYLPATCGSYSMIALVNPRDQNLLQGFCQALYAKATQMGMDFPKWPDLVKYGRGRDDVVMLFNEIANEYKQTSTSCDLVIVVLPGKNSDIYMTVKESSDMIHGIMSQCVLMKNVQRPSPATCSNIILKTRSLQVNMKLGGINSRIVADNITHKYIIDQPTLVVGIDVTHPTQAEERMNIPSVAAVRGVHESDGLSETGSVISSLSSLMSVGRPRRRREFEAGDINANQSNSDAALQECVSVTDKFKSRMYFI"
     misc_feature    76..>1932
                     /locus_tag="NECAME_00996"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1219..>1932
                     /locus_tag="NECAME_00996"
                     /note="PIWI domain. Domain found in proteins involved in
                     RNA silencing. RNA silencing refers to a group of related
                     gene-silencing mechanisms mediated by short RNA molecules,
                     including siRNAs, miRNAs, and heterochromatin-related
                     guide RNAs. The central component...; Region: Piwi-like;
                     cl00628"
                     /db_xref="CDD:412485"
     misc_feature    order(1648..1650,1660..1662,1696..1707,1714..1716,
                     1738..1740,1747..1749,1759..1761,1786..1788)
                     /locus_tag="NECAME_00996"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:239208"
ORIGIN      
atccattctccggataacctttcgtcgtcgccaagaaagagctctccgtcaaattcgtcacggattactggatcgccaagagatttgtcgcctcttctgttacaagagctagcatgcatgaacgtaagagaagtggctgcccgaccgggaatcggtcaaattgggcgacctatcgcgatacgctcaaatttcttcgaaatcgatctgtctagttcaaatatgatggttgtgcaatatcacgtagaggtgcatcatcctggcagtcgcaaacttgaccgcgagacaactattttccgctatcgttttcagatgaggttagaagcagatgtaccgcttgcaaaagattctcgagagcgcactccatgcgcagtatcatttcagtgtgttggaccagttctcatcgaaatgcgtcgaacgcgcacaaataatttggacgaaagggtactgacccctattcaaattctggacatcgtctgtcgtcagagtctcacttgtccatttatagacaattccgcaaacttctattcgtggaagtcgtcttgctatcgtatccctattaatggagcactggccctcgatttagaaggtggtaaggaaatgtggactggctttttctcctccgcacatgttgcgagtggatggaagccgttactcaatattgacggtgaattcaatatctcaaatgcatttttactaatctcaagtgaaatggaatttcagttgcacacactgccttctacaaagcaaaaatttctatggttcaatttatgtccaagcacactttacaaggagttctcgctgtcaaatcatgagatgaagatattagcagaagctgtaaaaggaatcaaaatacggatttcacacagaaaaggggctgtacgagtgtatcgtgtcaatagtcttcaaatgccagctgatcagctgacattcaaaggcgtgacggaagatggacgtgaaacgataaaatcagtagctcaatattttgcagaaaagtacgctgaactgcgctttcccaaactaccgtgtctacatgttggtccgcccactcggaacatctttttcccacttgaagtatgcgaaatggataccccacaaaaatacaacaagaaactcagtgaaaagcaaacaagttccatcataagagcagctgcagttgacgcctcacaacgggaagagcgcatcgctcaactctgccagcaagctggtttcgaccgtgacccattcctgaaagagttcggactttctgtctctcccaggatgttcgaaacaatggctagggtcattcaaccaccgcagattatgtttggagataattcaaagatggtggatcctatagtacatcctaaagatggtgcgtggtctatggataaccaaaccctctaccttccagccacatgtggcagttactctatgatcgccttagtgaatccaagagatcagaatctcctccaaggtttttgtcaagcgctctacgccaaagccacccagatgggcatggacttcccgaaatggcctgatctcgtcaaatatgggcgtggtcgtgatgatgtagtgatgttgttcaacgagatcgctaacgagtacaagcaaaccagcacaagctgtgatctagtgatcgtagttctgcctggaaagaactcggatatctacatgacggtcaaggagagctcagacatgattcacgggattatgtcgcaatgtgtgctgatgaaaaacgttcagcgtccatcaccggcaacttgctcgaatattatccttaaaacacgatctttgcaggtcaacatgaaacttggcggtatcaatagccgtattgttgctgacaatatcacacacaagtatatcatcgaccaaccaacattagtagttggaattgacgtcacacatccaactcaggcagaagaacgcatgaatattccatcggtggcagcggtacgtggtgttcacgaatccgatggactgtccgaaaccggctctgtgatctcgtcgttatcgtccttaatgtccgttggtcgtccacggaggcgtcgtgaatttgaagccggtgatatcaacgcgaatcaatcgaactcggacgctgcactacaggagtgtgtctccgtaaccgacaaattcaaaagccgcatgtatttcatctga
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]