GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-20 06:31:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_012751099            1720 bp    mRNA    linear   PRI 24-FEB-2017
DEFINITION  PREDICTED: Microcebus murinus claudin 2 (CLDN2), transcript variant
            X2, mRNA.
ACCESSION   XM_012751099
VERSION     XM_012751099.1
DBLINK      BioProject: PRJNA285159
KEYWORDS    RefSeq.
SOURCE      Microcebus murinus (gray mouse lemur)
  ORGANISM  Microcebus murinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini;
            Lemuriformes; Cheirogaleidae; Microcebus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_033692.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Microcebus murinus Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Microcebus murinus"
                     /mol_type="mRNA"
                     /isolate="mixed"
                     /db_xref="taxon:30608"
                     /chromosome="X"
                     /sex="pooled male and female"
                     /tissue_type="liver; kidney"
                     /note="three separate animals were used in this assembly:
                     #8(Reference animal), 1886F (Citronella), 7006M (Rosehip)"
     gene            1..1720
                     /gene="CLDN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 40 ESTs, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105863674"
     CDS             357..1049
                     /gene="CLDN2"
                     /codon_start=1
                     /product="claudin-2"
                     /protein_id="XP_012606553.1"
                     /db_xref="GeneID:105863674"
                     /translation="
MASLGLQLVGYILGLLGLLGTLVAMLLPSWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVVGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLVAGIILCFSCPSQRNRSNYYDAYQAQPLATRSSPRPGQPPKAKSEFNSYSLTGYV"
     misc_feature    423..899
                     /gene="CLDN2"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
aagtctctgacccaaggctcagatttgcagatggattttgcaaagctgtggttagcaattagaaatcctttatcacctcaggctgtggccccttgcacttcactcccctctctcaggatcccttcctccatcttcaggggcatctccccctccaaggctctgcaaaagaacggctctgtcttctagatgccttcttgagcctgcttgtggccacccacagacacttgtaaggaggagagaagtcagcttggcagaattactctgaaatgagggattagaagccgggatctgtggagcaagaactgcagccagaagaaggagcgggccctgaagacgcttctactgagaggtctgccatggcctctcttggccttcaacttgtcggctacatcctaggccttctggggctgttgggcacactggttgccatgttgctccccagttggcgaacgagttcttacgttggtgccagcattgtgacggcagtcggcttttccaagggcctctggatggagtgtgccacccacagcacaggcatcacccagtgtgacatctacagcacccttctaggcctgcccgctgacatccaggctgcccaggccatgatggtgacatccagtgcaatctcctcgctggcctgcattatctctgtggtgggcatgaggtgcacagtcttctgccaggaatccagggccaaagacagagtggcggtagtaggcggagtcttcttcatccttggaggtctcctgggcttcattcctgttgcctggaatcttcatgggatcctgcgggacttctactcaccactggtgcctgacagcatgaaatttgagatcggagaagctctttacttgggcattatttcttccctgttctccttggtggctggaatcatcctctgcttttcctgtccatcccagagaaatcgctccaactactacgatgcctaccaagcccagcctcttgccactaggagctctcccaggcctggtcagcctcccaaagccaagagtgaattcaactcctacagtctgaccgggtatgtgtgaagaaccaggggccagagctgggggtggctggggctgtggaaaccagtggacaggcccctggggccacaggtgagggacacggccactggatcatgtcagaaagtgctgctgaggatagactgactttggccactggattgagcaaaggcagaaatgggagctagtgtgacagcatgcaggttgaattgcctgcaggatgctcaccaagccagcctttctgtttccttcaccttgctctccccctgccctgagtccccaaccctaaacttgaaaccagagcccctacctttagccaggccccagaggctcccttctgccctttggtttacctgggaaaccatccccaaacccactaatcatcccggggacttactctctttgatcaaagaaagaccctctccctctggctgaggttgctcttagcttgttgctgggggatgggggggagaagtggtggcttttatgggcatggctcgaacctccttctcaagcctccctccaaagaaactgattggtcagtaatgggctgtagaacctccatcccactcttgttatgactccacagtgtccagactggtttgtgcatgaactgaaataaaaccatcccacggtatccagggaacagaaggcaactgggtgcaggatgtgaggatgggtaggcagcttgggac
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]